Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E05
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.8  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   8.4  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   8.4  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   8.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   8.4  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +1

Query: 358 PVYMWIPNMSVSLESYSRRRXRPLPTLVGRHTQKTRQTSFLSVKSRWQR*XRTXK 522
           P Y W P +   +++ SR+    + T+     ++  QT  L+ +   ++  R  K
Sbjct: 300 PAYWWTPAIQAMIDNLSRKEQMTMRTI---PPEEQLQTELLAARESLRKAIRLSK 351


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 78  FKIKCKAEINITVFEDIFCELLY 10
           FK  CK +I    F+D  CE+ +
Sbjct: 144 FKSTCKIDITWFPFDDQHCEMKF 166


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 78  FKIKCKAEINITVFEDIFCELLY 10
           FK  CK +I    F+D  CE+ +
Sbjct: 144 FKSTCKIDITWFPFDDQHCEMKF 166


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 443 EGIPRKPGRLHSSQSRAGGSDKXGQXSPR 529
           +GIP +PG    + +  GG  + G   P+
Sbjct: 388 DGIPGQPGIAGPAGAPGGGEGRPGAPGPK 416


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 336 KWTTSTSTRVHVDTKY 383
           KWT  + T V VD KY
Sbjct: 526 KWTAISDTGVPVDVKY 541


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,795
Number of Sequences: 2352
Number of extensions: 10108
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)