Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E05
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U71268-1|AAD00180.1| 575|Homo sapiens potential transcriptional... 89 1e-17
U71267-1|AAD00179.1| 642|Homo sapiens potential transcriptional... 89 1e-17
BC035590-1|AAH35590.1| 572|Homo sapiens CCR4-NOT transcription ... 89 1e-17
AL389980-1|CAB97536.1| 572|Homo sapiens NOT4, potential transcr... 89 1e-17
AF180475-1|AAF29829.1| 433|Homo sapiens Not4-Np protein. 89 1e-17
>U71268-1|AAD00180.1| 575|Homo sapiens potential transcriptional
repressor NOT4Hp protein.
Length = 575
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3
Query: 435 ACRKAYPENPADFIPLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVVQNNLXFVV 614
ACRK YPE+PA + PLSQE++ I + K ++ +R+ K E+R+ LA+VRVVQ NL FVV
Sbjct: 55 ACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVV 114
Query: 615 GLPVRLADPEILK 653
GL RLADPE+LK
Sbjct: 115 GLSQRLADPEVLK 127
Score = 70.9 bits (166), Expect = 4e-12
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 329 PWQVDDLHFYPCTCGYQICRFRWNRIREGXNGLCPRLSEGIPRKP 463
P ++DD++F+PCTCGYQICRF W+RIR NGLCP + P P
Sbjct: 20 PLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64
>U71267-1|AAD00179.1| 642|Homo sapiens potential transcriptional
repressor NOT4Hp protein.
Length = 642
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3
Query: 435 ACRKAYPENPADFIPLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVVQNNLXFVV 614
ACRK YPE+PA + PLSQE++ I + K ++ +R+ K E+R+ LA+VRVVQ NL FVV
Sbjct: 55 ACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVV 114
Query: 615 GLPVRLADPEILK 653
GL RLADPE+LK
Sbjct: 115 GLSQRLADPEVLK 127
Score = 70.9 bits (166), Expect = 4e-12
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 329 PWQVDDLHFYPCTCGYQICRFRWNRIREGXNGLCPRLSEGIPRKP 463
P ++DD++F+PCTCGYQICRF W+RIR NGLCP + P P
Sbjct: 20 PLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64
>BC035590-1|AAH35590.1| 572|Homo sapiens CCR4-NOT transcription
complex, subunit 4 protein.
Length = 572
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3
Query: 435 ACRKAYPENPADFIPLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVVQNNLXFVV 614
ACRK YPE+PA + PLSQE++ I + K ++ +R+ K E+R+ LA+VRVVQ NL FVV
Sbjct: 55 ACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVV 114
Query: 615 GLPVRLADPEILK 653
GL RLADPE+LK
Sbjct: 115 GLSQRLADPEVLK 127
Score = 70.9 bits (166), Expect = 4e-12
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 329 PWQVDDLHFYPCTCGYQICRFRWNRIREGXNGLCPRLSEGIPRKP 463
P ++DD++F+PCTCGYQICRF W+RIR NGLCP + P P
Sbjct: 20 PLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64
>AL389980-1|CAB97536.1| 572|Homo sapiens NOT4, potential
transcriptional repressor, alternatively spliced product
protein.
Length = 572
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3
Query: 435 ACRKAYPENPADFIPLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVVQNNLXFVV 614
ACRK YPE+PA + PLSQE++ I + K ++ +R+ K E+R+ LA+VRVVQ NL FVV
Sbjct: 55 ACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVV 114
Query: 615 GLPVRLADPEILK 653
GL RLADPE+LK
Sbjct: 115 GLSQRLADPEVLK 127
Score = 70.9 bits (166), Expect = 4e-12
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 329 PWQVDDLHFYPCTCGYQICRFRWNRIREGXNGLCPRLSEGIPRKP 463
P ++DD++F+PCTCGYQICRF W+RIR NGLCP + P P
Sbjct: 20 PLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64
>AF180475-1|AAF29829.1| 433|Homo sapiens Not4-Np protein.
Length = 433
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3
Query: 435 ACRKAYPENPADFIPLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVVQNNLXFVV 614
ACRK YPE+PA + PLSQE++ I + K ++ +R+ K E+R+ LA+VRVVQ NL FVV
Sbjct: 55 ACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVV 114
Query: 615 GLPVRLADPEILK 653
GL RLADPE+LK
Sbjct: 115 GLSQRLADPEVLK 127
Score = 70.9 bits (166), Expect = 4e-12
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 329 PWQVDDLHFYPCTCGYQICRFRWNRIREGXNGLCPRLSEGIPRKP 463
P ++DD++F+PCTCGYQICRF W+RIR NGLCP + P P
Sbjct: 20 PLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,099,431
Number of Sequences: 237096
Number of extensions: 1686867
Number of successful extensions: 4209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4209
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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