Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E05
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    69   2e-12
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    30   1.6  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    29   2.9  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    29   2.9  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    29   2.9  

>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 31/73 (42%), Positives = 48/73 (65%)
 Frame = +3

Query: 435 ACRKAYPENPADFIPLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVVQNNLXFVV 614
           ACR+ YPE+P +F P++ + V     + + ++   + K  ++R+ L N RV+Q NL +VV
Sbjct: 54  ACRQPYPEDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVV 113

Query: 615 GLPVRLADPEILK 653
           GL  R+ADPEILK
Sbjct: 114 GLSPRVADPEILK 126



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = +2

Query: 335 QVDDLHFYPCTCGYQICRFRWNRIREGXNGLCPRLSEGIPRKP 463
           ++DD++FYPC C YQICRF W+RIR   NGLCP   +  P  P
Sbjct: 21  ELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYPEDP 63


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 428 CPRLSEGIPRKPGRLH-SSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPX 604
           CP   +   +   ++H +S+ R   S +    SPR     +  R  + +RERS R ++  
Sbjct: 116 CPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRD 175

Query: 605 VRRGPARQTRR 637
            +R  +R+ RR
Sbjct: 176 RKRSRSRERRR 186


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 428 CPRLSEGIPRKPGRLH-SSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPX 604
           CP   +   +   ++H +S+ R   S +    SPR     +  R  + +RERS R ++  
Sbjct: 242 CPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRD 301

Query: 605 VRRGPARQTRR 637
            +R  +R+ RR
Sbjct: 302 RKRSRSRERRR 312


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 479 SQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVRRGPARQTRR 637
           ++ +  G+D+ G  SPR  +     R     R RSR  ++   RR  +R + R
Sbjct: 72  ARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSR 124


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 479 SQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVRRGPARQTRR 637
           ++ +  G+D+ G  SPR  +     R     R RSR  ++   RR  +R + R
Sbjct: 72  ARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSR 124


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 479 SQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVRRGPARQTRR 637
           ++ +  G+D+ G  SPR  +     R     R RSR  ++   RR  +R + R
Sbjct: 72  ARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSR 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,848
Number of Sequences: 27780
Number of extensions: 252396
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)