Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E04
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    59   3e-10
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    58   8e-10
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    57   1e-09
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   2.9  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   6.7  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.8  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   8.8  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 59.3 bits (137), Expect = 3e-10
 Identities = 32/92 (34%), Positives = 47/92 (51%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 313
           D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGSG           
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAA 76

Query: 314 XXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                      E+           SD+DMGFG
Sbjct: 77  APAAADGEAPAEE--KEEAKEEEESDEDMGFG 106


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 58.0 bits (134), Expect = 8e-10
 Identities = 32/92 (34%), Positives = 46/92 (50%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 313
           D+ + +T +K+ ++ KA  V VEP W  +FAKALEG ++++L+ NIGS            
Sbjct: 17  DEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGA 76

Query: 314 XXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                     EEK           SD+DMGFG
Sbjct: 77  GAAAPAEAAEEEK--KEEAKEEEESDEDMGFG 106


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 31/92 (33%), Positives = 46/92 (50%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 313
           D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGS            
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGA 76

Query: 314 XXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                      E+           SD+DMGFG
Sbjct: 77  PAAAAGGEAAAEE-QKEEAKEEEESDEDMGFG 107


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 116 LLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 265
           +L++  D   A++ E+IS IL  +      +W      AL G+N++D I+
Sbjct: 122 VLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 155 QLRQHHHPARMRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDXQR 3
           +LR       +R +  H      TI +  ER SCRRP L  +  RL+   +R
Sbjct: 203 KLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLER 254


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 49  GLRQLARSKLKMVSKAELACVYSAL 123
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 257 GHGH*CLPRLWRTDL 213
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,024
Number of Sequences: 5004
Number of extensions: 24775
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)