Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E04
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    66   2e-11
11_01_0483 - 3718104-3718802,3718817-3719308                           31   0.54 
10_07_0100 + 12861588-12862601                                         28   3.8  
11_01_0340 + 2534998-2535660                                           27   6.7  
05_01_0555 + 4867494-4867577,4868987-4869607                           27   8.8  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/49 (59%), Positives = 38/49 (77%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSG 280
           DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI ++GSG
Sbjct: 17  DDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG 65


>11_01_0483 - 3718104-3718802,3718817-3719308
          Length = 396

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 45  LRPTATCTFKTKNGVKS*ISMCLLCSHPGWMMMLP 149
           LRP AT T    +GV    +      +PGW+M++P
Sbjct: 4   LRPVATATATLPSGVPPPAAAAAARGYPGWVMLMP 38


>10_07_0100 + 12861588-12862601
          Length = 337

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 407 RSPCHRRTPRVPP 369
           R PCH +TPR PP
Sbjct: 210 RRPCHAKTPRTPP 222


>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 240 PSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSSQDESRVNTC 103
           P+ + ++     GS   AAA +  E  SP +++SSS     R ++C
Sbjct: 58  PTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSC 103


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 258 RSRTLMPSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSSQD 124
           R   +MP+ A+        ST   A F ++ ++ PVT +S S  D
Sbjct: 175 RVAAVMPAPAMRAAVWGMTSTVAVAGFYLLFVYRPVTISSYSEMD 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,903,149
Number of Sequences: 37544
Number of extensions: 190851
Number of successful extensions: 440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)