Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E04
         (512 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...   106   2e-23
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...   106   2e-23
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...   106   2e-23
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...   103   1e-22
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    29   3.7  
BT011434-1|AAR99092.1|  765|Drosophila melanogaster RH61815p pro...    28   6.5  
AE014134-1179|AAF52446.2|  746|Drosophila melanogaster CG31632-P...    28   6.5  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score =  106 bits (254), Expect = 2e-23
 Identities = 55/93 (59%), Positives = 59/93 (63%)
 Frame = +2

Query: 131 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 310
           +DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAA 76

Query: 311 XXXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                       +K           SDDDMGFG
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFG 109



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 82  MVSKAELACVYSALIL 129
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score =  106 bits (254), Expect = 2e-23
 Identities = 55/93 (59%), Positives = 59/93 (63%)
 Frame = +2

Query: 131 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 310
           +DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAA 76

Query: 311 XXXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                       +K           SDDDMGFG
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFG 109



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 82  MVSKAELACVYSALIL 129
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score =  106 bits (254), Expect = 2e-23
 Identities = 55/93 (59%), Positives = 59/93 (63%)
 Frame = +2

Query: 131 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 310
           +DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAA 76

Query: 311 XXXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                       +K           SDDDMGFG
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFG 109



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 82  MVSKAELACVYSALIL 129
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score =  103 bits (248), Expect = 1e-22
 Identities = 54/93 (58%), Positives = 58/93 (62%)
 Frame = +2

Query: 131 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXX 310
           +DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALE INV+DLITNIGSGV         
Sbjct: 17  VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLITNIGSGVGAAPAGGAA 76

Query: 311 XXXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                       +K           SDDDMGFG
Sbjct: 77  PAAAAAAPAAESKKEEKKKEEESDQSDDDMGFG 109


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 264 VIRSRTLMPSKALANRPGQYGSTXTAAAFKMVEI-FSPVTATSSSSQDESRVN 109
           +I S+ L+P+K   N P QY  T    A K  +I FS  +  S     +S  N
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKN 307


>BT011434-1|AAR99092.1|  765|Drosophila melanogaster RH61815p
           protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 440 IXS*SXLVKETRSPCHRRTPRVPPLXFXXSS 348
           + S S L++    P  RRTPR PPL    SS
Sbjct: 329 LFSVSALLRRDEPPPQRRTPRSPPLGHLTSS 359


>AE014134-1179|AAF52446.2|  746|Drosophila melanogaster CG31632-PA
           protein.
          Length = 746

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 440 IXS*SXLVKETRSPCHRRTPRVPPLXFXXSS 348
           + S S L++    P  RRTPR PPL    SS
Sbjct: 329 LFSVSALLRRDEPPPQRRTPRSPPLGHLTSS 359


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,231
Number of Sequences: 53049
Number of extensions: 307917
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)