Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E04
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    83   9e-17
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    80   1e-15

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 83.4 bits (197), Expect = 9e-17
 Identities = 43/92 (46%), Positives = 54/92 (58%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 313
           DD+VA+TGEKI+T+LKAA V  EPYWPGLFAKALEG++V++LIT++ SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAA 77

Query: 314 XXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                       +           SDDDMGFG
Sbjct: 78  AAPAAGGAAPAAE-TKKKEEPKEESDDDMGFG 108



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 82  MVSKAELACVYSALIL 129
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 42/92 (45%), Positives = 53/92 (57%)
 Frame = +2

Query: 134 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 313
           DD+VA+TGEKI+T+LKAA V  EP WPGLFAKALEG++V++LIT++ SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAA 77

Query: 314 XXXXXXXXXXEEKXXXXXXXXXXXSDDDMGFG 409
                       +           SDDDMGFG
Sbjct: 78  AAPAAGGAAPAAE-TKKKEEPKEESDDDMGFG 108



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 82  MVSKAELACVYSALIL 129
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,903,786
Number of Sequences: 27780
Number of extensions: 146839
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)