Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    28   1.4  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    27   1.8  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   4.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   5.5  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    25   7.2  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    25   7.2  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   9.5  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 169 MSRIQVDPKLFVTCRLCLDDTGQYQIVPTVQE 264
           + R ++DP LF  C+LC D+T +  ++   QE
Sbjct: 243 LRRSKLDP-LFPACQLCADETKKNDLLAAFQE 273


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 496 ITKKHVLKRKRMISSSSS----DCDPPVEKKPWKNDSEVCE 606
           +T+K  +K  + I   S       D P+EK+PW N   VC+
Sbjct: 101 LTRKEEVKESQKIDLYSDVRDQQTDLPLEKRPWINTDIVCK 141


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 175 RIQVDPKLFVTCRLCLD-DTGQYQIVPTVQEQIKFCFDILVEPFDGLPQLICQ 330
           ++ V   L    +L LD DT +  ++P + EQI  C D L + +  L ++ICQ
Sbjct: 167 KVLVGLNLVRLSQLNLDIDTYRDHVLPAIIEQIIECRDSLAQEY--LVEVICQ 217


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +2

Query: 41  CRSVIKNYLLNKLVINSINFGVLIEF*TINATSQTQTKKLSLK*VEYRSIQSCLLHVDFV 220
           C  ++  YL+N+ +I    +G+        + +++Q +K+SLK ++Y S        DFV
Sbjct: 300 CCQLLPTYLINRNLIRHSGWGL--------SDAESQIRKISLKIIDYLSSHEPEKDQDFV 351


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 445 QNDVTSSQFNELENEDQITKKHVLKRKRMISSSS 546
           +  V+ +QF+ L  ED++ KK   KR+R   + S
Sbjct: 81  EKPVSGNQFSLLSEEDEVDKKE--KRRRRFENGS 112


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 448 NDVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKN 588
           N +T    ++L       K+  +++      SS +  PP +KK W++
Sbjct: 280 NRITDYVDSDLSESSMKEKQSKIEKYMKSDKSSKNFKPPFQKKSWED 326


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 128 NATSQTQTKKLSLK*VEYRSIQSCLLHVDFVWM 226
           NA S    +K  L    Y ++ +C  H+D  W+
Sbjct: 79  NAASSPDQRKWELLQNLYSNLTTCFSHIDGAWL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,141
Number of Sequences: 5004
Number of extensions: 49452
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)