Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E02
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1143 - 9554338-9554983,9555004-9555746 30 1.9
02_05_0699 + 31013176-31013345,31013749-31013872,31013950-310140... 29 2.4
11_06_0710 - 26492093-26493460 29 3.2
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 28 7.5
03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639 28 7.5
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 28 7.5
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 27 9.9
03_01_0595 + 4391877-4392005,4392155-4392287,4392402-4392490,439... 27 9.9
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 27 9.9
>06_01_1143 - 9554338-9554983,9555004-9555746
Length = 462
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -3
Query: 285 IKTKFNLFLNCWNNLILASIIQTKSTCNKQLWIDLYSTHFKDNFFVWVWLVAL 127
+K+ + L N N++ AS T ++ ++LW+ L+ T + ++ W +AL
Sbjct: 101 VKSAYRLAWNLSKNVVEASS-STATSGERKLWLALWKTRVQAKIKIFAWKLAL 152
>02_05_0699 +
31013176-31013345,31013749-31013872,31013950-31014032,
31014106-31014217,31014297-31014401,31014809-31014859,
31015893-31015979,31016325-31016402,31016477-31016530,
31016608-31016892
Length = 382
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 439 SQQNDVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKP 579
S TSS+ ++ +++ + K+ K K M S S D P EKKP
Sbjct: 314 SSNKGKTSSKESKSDDDQTVKKEKKSKSKSMEGSRSDDDGPRKEKKP 360
>11_06_0710 - 26492093-26493460
Length = 455
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 481 ENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWK 585
+ ED+ KK K+K+ S SS D D EKK K
Sbjct: 128 DGEDESEKKKKKKKKKSKSKSSDDDDDDAEKKSKK 162
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -3
Query: 285 IKTKFNLFLNCWNNLILASIIQTKSTCNKQLWIDLYSTHFKDNFFVWVWLVAL 127
+K+ + L N N + AS T ++ ++LW+ L+ T + ++ W +AL
Sbjct: 157 VKSAYMLAWNLSKNAVEASS-STATSGERKLWLALWKTKVQAKIKIFAWKLAL 208
>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
Length = 649
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/49 (26%), Positives = 17/49 (34%)
Frame = +1
Query: 211 RLCLDDTGQYQIVPTVQEQIKFCFDILVEPFDGLPQLICQTCEQRLSEY 357
R C G Q VP + E+ + E F IC L +Y
Sbjct: 425 RFCPSSCGSVQTVPVLSERASMTLSCIQEEFKAEQSFICGKVNDALKKY 473
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 230 LASIKLFQQFKNKLNFVLIFSWNHLMAYLS 319
L IKL Q FK+K FSW H YL+
Sbjct: 40 LEVIKLMQSFKSKEYVRETFSWQHYYWYLT 69
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 436 QSQQNDVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKND 591
QS + SQ E+ +I ++ +R+R + D P + ++P +ND
Sbjct: 14 QSYEEHADFSQSEHAESAVEIMRREREERRRKLKREQHDDGPRLNRQPIRND 65
>03_01_0595 +
4391877-4392005,4392155-4392287,4392402-4392490,
4392639-4392696,4393182-4393337,4393556-4393704,
4394208-4394327,4394513-4394726,4394813-4394915,
4395022-4395069,4395267-4395312,4395647-4395834,
4395943-4396105,4396227-4396292
Length = 553
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 481 ENEDQITKKHVLKRKRMISSSSSDCDP--PVEKKP 579
+++ +I K HV+K R + + DC+P P+++ P
Sbjct: 463 QSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSP 497
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 451 DVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSEVCESKK 615
D + S ++ ED + +++++ +S PPV++KP D E + +K
Sbjct: 535 DDSGSPTDDSGGEDSDASESGGEKEKLSKKEASSSKPPVKRKPKGRDEEGSDKRK 589
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,743,287
Number of Sequences: 37544
Number of extensions: 266797
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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