Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E02
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    31   0.54 
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    29   2.2  
Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF003140-2|ABR92610.1|  233|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z73103-10|CAA97427.2|  205|Caenorhabditis elegans Hypothetical p...    29   3.8  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    29   3.8  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    29   3.8  
U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst compone...    28   6.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    27   8.8  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      27   8.8  

>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 436 QSQQNDVTSSQFNELENEDQITKKHVLKRKRM--ISSSSSDCDPPVEKKPWKND 591
           +S+  D +       + E++  +K   K++R   +S S SD D   +KK WK +
Sbjct: 184 KSKHQDTSDDSEESEDEEEKSPRKRSSKKRRAASVSDSDSDSDSDFDKKKWKKN 237


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 637 NYITGIRIFWIHKLQNHFSKVFFLL 563
           N +T I +FW + + N  S++FFLL
Sbjct: 397 NLLTLISLFWFNFINNRASRIFFLL 421


>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 472 NELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSE 597
           NE      I   +V K+++ I+SSS + +PPV+K   K+ S+
Sbjct: 42  NEAPKLKDIVTDNVFKKRKRIASSSGN-EPPVKKMAAKDSSD 82


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 472 NELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSE 597
           NE      I   +V K+++ I+SSS + +PPV+K   K+ S+
Sbjct: 42  NEAPKLKDIVTDNVFKKRKRIASSSGN-EPPVKKMAAKDSSD 82


>AF003140-2|ABR92610.1|  233|Caenorhabditis elegans Hypothetical
           protein C44E4.8 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 229 TGQYQIVPTVQEQIKFCFDI--LVEPFDG 309
           +GQ +  PT++EQ ++  DI  L+ PFDG
Sbjct: 63  SGQSKPKPTIEEQSRYLVDIKQLITPFDG 91


>Z73103-10|CAA97427.2|  205|Caenorhabditis elegans Hypothetical
           protein C08F8.7 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 559 PPVEKKPWKNDSEVCESK-KFGCRLCNCC 642
           P +E++ W ++SE+ + K K   R C CC
Sbjct: 169 PNIERRKWSSESEIGDKKCKNWLRSCCCC 197


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 445 QNDVTSSQFNELENEDQITKKHVLKRKRMISSSSSD 552
           Q +  +++FNE+  EDQI K H L    M+    +D
Sbjct: 802 QLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKAD 837


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 445 QNDVTSSQFNELENEDQITKKHVLKRKRMISSSSSD 552
           Q +  +++FNE+  EDQI K H L    M+    +D
Sbjct: 802 QLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKAD 837


>U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst component
           protein 7 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 306 IKWFHENIKTKFNLFLNCWNNLILASIIQTKSTC--NKQLWIDLYSTHFKD 160
           + ++HE I T  N +L  WN   +ASI+++      +KQ+   + ST  +D
Sbjct: 510 LSFYHEEIATCTNEYLKSWNG--IASILKSVDRIGEDKQMAKQIMSTFVRD 558


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 439 SQQNDVTSSQFNELENEDQITKKHVLKR--KRMISSSSSDCDPPVEKKPWKNDSEVCESK 612
           S  +  +SS  +E E+E    KKH +K+  K+  SSSSS            ++ E    K
Sbjct: 217 SSSSSSSSSSSSESEDEKHHHKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHK 276

Query: 613 KFGCR 627
           K   +
Sbjct: 277 KHAAK 281


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 448  NDVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSEVCESKKF 618
            ND T    N L N D + +  +LK +   +     C+   E++P  ++S+  E++ F
Sbjct: 2440 NDGTDDILNRLINSDYLEEHMILKERARGALGWKLCNVLKEREPLDSESDEEENESF 2496


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 237 LASIIQTKSTCNKQLWIDLYS---THFKDNFFVWVWL 136
           L SI   +S C KQ  ID+ +   T FK   F WVW+
Sbjct: 296 LPSIFDCQSKCRKQK-IDMLNELATIFKKRSFGWVWM 331


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 128 NATSQTQTKKLSLK*VEYRSIQSCLLHVDFVWMILASIKLF-QQFKNKLNFV 280
           NAT +  +++L +  + ++ +Q+ ++H D +W  + ++ +F    KN  +FV
Sbjct: 368 NATIKDMSERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFCGDVKNGTHFV 419


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 128 NATSQTQTKKLSLK*VEYRSIQSCLLHVDFVWMILASIKLF-QQFKNKLNFV 280
           NAT +  +++L +  + ++ +Q+ ++H D +W  + ++ +F    KN  +FV
Sbjct: 368 NATIKDMSERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFCGDVKNGTHFV 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,928,809
Number of Sequences: 27780
Number of extensions: 278648
Number of successful extensions: 798
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)