Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E02
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   4.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   4.5  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 457 TSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPW 582
           T ++F  LE E +    H L R+R I  + + C    + K W
Sbjct: 14  TYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIW 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 472 NELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWK 585
           N L + ++  K+ +L  +  ISSSSS      E   W+
Sbjct: 351 NSLSSSEEKLKQDILNLRTDISSSSSSISSSEENDFWQ 388


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 289 EYQNKI*FVLELLEQFDTGQYHPNKVDM*QTTLD 188
           E+QN    +LE+L Q    QY P   +    TLD
Sbjct: 126 EFQNLKEVMLEVLRQALGKQYTPEVAEAWNKTLD 159


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 289 EYQNKI*FVLELLEQFDTGQYHPNKVDM*QTTLD 188
           E+QN    +LE+L Q    QY P   +    TLD
Sbjct: 126 EFQNLKEVMLEVLRQALGKQYTPEVAEAWNKTLD 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,511
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)