Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E02
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17787.1 68415.m02061 expressed protein                             30   1.5  
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ...    30   1.5  
At2g32660.1 68415.m03992 disease resistance family protein / LRR...    28   6.2  
At1g45207.2 68414.m05186 remorin family protein Since this genom...    28   6.2  
At5g11830.1 68418.m01382 hypothetical protein                          27   8.2  
At5g01420.1 68418.m00055 glutaredoxin family protein                   27   8.2  
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER...    27   8.2  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    27   8.2  
At2g38470.1 68415.m04725 WRKY family transcription factor contai...    27   8.2  
At1g55610.1 68414.m06365 protein kinase family protein contains ...    27   8.2  

>At2g17787.1 68415.m02061 expressed protein
          Length = 324

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 451 DVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSEVCESKKFGCRL 630
           ++T+    E ++      + V K K+M S SS  C+P  ++KP  +  E     K  CR 
Sbjct: 187 EITTKLNKEKKSVPSKDNRKVSKEKKMPSLSS--CNPLEQEKPTSSHQETPGPSKLLCRK 244

Query: 631 C 633
           C
Sbjct: 245 C 245


>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
           Pfam PF00628: PHD-finger domain; contains TIGRFAMS
           TIGR01053: zinc finger domain, LSD1 subclass; contains
           Pfam PF00271: Helicase conserved C-terminal domain;
           similar to WSSV086 (GI:19481678)[shrimp white spot
           syndrome virus]; similar to nuclear protein Np95
           (GI:17939938) [Mus musculus]
          Length = 1299

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 199 FVTCRLCLDDTGQYQIVPTVQEQIKFCFDILVEPFDGLPQ--LICQTCEQRLSEYYKIKK 372
           F  C++C  +  + +++   +    F  D +V P   LP    IC +C+++  EY + ++
Sbjct: 701 FQICQICSGEDERKKLLHCSECDKLFHPDCVVPPVIDLPSEAWICFSCKEKTEEYIQARR 760

Query: 373 SYV 381
            Y+
Sbjct: 761 LYI 763


>At2g32660.1 68415.m03992 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
           [Lycopersicon hirsutum] gi|2808683|emb|CAA05268
          Length = 589

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 201 KQLW-IDLYSTHFKDNFFVWVWLVALIV 121
           K+LW +DL S   K N   W+W + L+V
Sbjct: 122 KKLWYLDLSSNRIKGNVPDWIWSLPLLV 149


>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 451 DVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSEVCESKK 615
           D  SS  +  + +D +     L+R + +SSS  D D       WKN    C S+K
Sbjct: 46  DRCSSTSDAHDRDDSLISGPSLERDQRVSSSCKDLDLDKRGTGWKNS---CNSRK 97


>At5g11830.1 68418.m01382 hypothetical protein
          Length = 174

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 DKKVVLKMSRIQVD-PKLFVTCRLCLDDTGQYQIVPTVQEQIKF 276
           D  +++K     VD P +F  CR    D G ++ VP+ + Q +F
Sbjct: 31  DFSILIKNEMYNVDNPSVFYNCRSSKKDIGWHKSVPSSEFQWEF 74


>At5g01420.1 68418.m00055 glutaredoxin family protein
          Length = 401

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 355 IPKVVAHMSGILTEVSHQMVPREYQNKI*FVLELLEQFDTGQ 230
           +PK+  H+  I +  S    P++ +N+I  V ELLE    G+
Sbjct: 37  LPKISNHIPQITSAASIWRTPQKSENQIANVTELLENVRQGE 78


>At4g05250.1 68417.m00793 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 318

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 460 SSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSEV 600
           S+ FN  E  D I    V     ++S++S    PP +  P  +  E+
Sbjct: 164 STPFNSYEEIDYIQDYPVSTSMELVSNNSDQVPPPEKSPPLNSSKEI 210


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 267 LFLNCWNNLILASIIQTKSTCNKQLWIDLYS 175
           L LN  NNL+  S+ ++ S C   LWI L S
Sbjct: 480 LILN--NNLLTGSLPESISKCTNMLWISLSS 508


>At2g38470.1 68415.m04725 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain;
          Length = 519

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +1

Query: 445 QNDVTSSQFNELENEDQITKKHVLKRKRMISSSSSDCDPPVEKKPWKNDSE 597
           Q+D    Q  +    D +      +   ++S    DC    E K WK D+E
Sbjct: 283 QSDSFGMQQEDNTTSDSVGDDEFEQGSSIVSRDEEDCGSEPEAKRWKGDNE 333


>At1g55610.1 68414.m06365 protein kinase family protein contains
           Prosite:PS00107: Protein kinases ATP-binding region
           signature
          Length = 1166

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 267 LFLNCWNNLILASIIQTKSTCNKQLWIDLYS 175
           L LN  NNL+  SI ++ S C   +WI L S
Sbjct: 480 LILN--NNLLTGSIPESISRCTNMIWISLSS 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,683
Number of Sequences: 28952
Number of extensions: 246020
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)