Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D24
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 110 7e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 108 2e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 96 2e-20
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 80 1e-15
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 79 2e-15
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 66 2e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 60 1e-09
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 52 4e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 4e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 52 4e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 8e-07
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 49 3e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 49 3e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.003
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.005
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.008
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 36 0.019
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 36 0.026
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.026
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.045
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 34 0.059
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.10
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.14
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.18
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.18
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.18
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.32
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.42
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.55
At3g31950.1 68416.m04046 hypothetical protein 31 0.55
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.55
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.55
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.73
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 0.96
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 0.96
At5g47430.1 68418.m05844 expressed protein 30 0.96
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 0.96
At4g17410.1 68417.m02607 expressed protein 30 0.96
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.3
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 29 1.7
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 29 1.7
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 29 1.7
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 1.7
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 1.7
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 29 1.7
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 29 1.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.2
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 2.2
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 2.2
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 29 2.2
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.2
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 2.2
At4g06479.1 68417.m00885 hypothetical protein 29 2.9
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 2.9
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 29 2.9
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 29 2.9
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 2.9
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.9
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 28 5.1
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 28 5.1
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 5.1
At5g21140.1 68418.m02524 expressed protein 28 5.1
At4g06526.1 68417.m00938 hypothetical protein 28 5.1
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 5.1
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 5.1
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 6.8
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 27 6.8
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 27 6.8
At4g30200.3 68417.m04295 expressed protein contains weak similar... 27 6.8
At4g30200.2 68417.m04294 expressed protein contains weak similar... 27 6.8
At4g30200.1 68417.m04293 expressed protein contains weak similar... 27 6.8
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 6.8
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)... 27 6.8
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 27 6.8
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 27 9.0
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 27 9.0
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 9.0
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 9.0
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 27 9.0
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 27 9.0
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 9.0
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 9.0
At1g30660.1 68414.m03749 toprim domain-containing protein contai... 27 9.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 9.0
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 110 bits (264), Expect = 7e-25
Identities = 57/164 (34%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXA---------- 303
CY C TGHFAR+CT G + + C+ C GH ARDC + +
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 304 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 441
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 442 TXTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 552
+ CY C SGH++R+C CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (263), Expect = 1e-24
Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Frame = +1
Query: 148 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 291
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 292 KEXADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 423
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 424 GGRES---ATXTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 558
G S + TCY+C GHI+R+C ++ CY CG GH++R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 264
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 265 RTGHFARDCKEXA-------DRCYRCNGTGHIARECA 354
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXA 303
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Frame = +1
Query: 451 CYNCNKSGHISRNC------------PDGTKTCYVCGKPGHISRECDEARN 567
CYNC + GHIS++C G + CY CG GH +R+C A N
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGN 152
Score = 35.1 bits (77), Expect = 0.034
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 142 SSSVCYKCNRTGHFARECT 198
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 499 GTKTCYVCGKPGHISREC 552
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 108 bits (260), Expect = 2e-24
Identities = 59/168 (35%), Positives = 76/168 (45%), Gaps = 35/168 (20%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 294
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 295 --EXADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 438
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 439 ATXTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 552
CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 93.9 bits (223), Expect = 7e-20
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Frame = +1
Query: 142 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEXAD- 306
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 307 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 417
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 418 PEGGRES---ATXTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 555
+ G + TCY C GHI++ C G + CY CG GH++R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 75.4 bits (177), Expect = 3e-14
Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
Frame = +1
Query: 214 SRDSGFNRQREKCFKCNRTGHFARDCKEXA----------------DRCYRCNGTGHIAR 345
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 346 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATXTCYNCNK 468
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 469 SGHISRNCPD--------GTKTCYVCGKPGHISREC 552
GH +R+C G TCY CG GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 55.2 bits (127), Expect = 3e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +1
Query: 148 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEX--------- 300
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 301 -ADRCYRCNGTGHIAREC 351
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXA 303
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 373 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 552
+C+NC + GH+A++C +GG + +SG G CY+CG GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145
Query: 553 DEA 561
++
Sbjct: 146 RQS 148
Score = 32.3 bits (70), Expect = 0.24
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 145 SSVCYKCNRTGHFARECT 198
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 95.9 bits (228), Expect = 2e-20
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = +1
Query: 148 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNG 327
++C C R GHFAR+C+ V C C GH A +C + RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 328 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATXTCYNCNKSGHISRNCPDGT 504
GH+A C+ +E C++C K+GH AR+C R C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 505 KTCYVCGKPGHISRECDEARNXP 573
K C C GHI+R+C RN P
Sbjct: 157 KACKNCRTSGHIARDC---RNDP 176
Score = 85.4 bits (202), Expect = 2e-17
Identities = 43/111 (38%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Frame = +1
Query: 238 QREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 417
Q C C R GHFARDC + C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSNVSV-CNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 418 PEGGRESATXTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 552
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 80.6 bits (190), Expect = 7e-16
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Frame = +1
Query: 142 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRC 321
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 322 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATXTCYNCNKSGHISRNC 492
+GHIAR+C ++P C C+ +GH+AR+CP+G + + + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 493 PD--GTKT---CYVCGKPGHISRECDEAR 564
D G C+ CG GH + EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 78.6 bits (185), Expect = 3e-15
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +1
Query: 148 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEXADR 309
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 310 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 471
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 472 GHISRNCPDG 501
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 151 VCYKCNRTGHFARECTQGGVVSRDSGFNR 237
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 79.8 bits (188), Expect = 1e-15
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Frame = +1
Query: 136 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEXAD 306
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTA--- 285
Query: 307 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATXTC 453
+ + + S CY C K GH +R+C + G+ S+T C
Sbjct: 286 ---QSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 454 YNCNKSGHISRNCPDGTKTCYVCGK 528
Y C K+GH SR+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Frame = +1
Query: 370 PSCYNCNKTGHIARNCPEGGRESATXT-CYNCNKSGHISRNCPDGTKT-----------C 513
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 514 YVCGKPGHISRECDEARNXP 573
+ CGKPGH SR+C P
Sbjct: 271 FKCGKPGHWSRDCTAQSGNP 290
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 79.4 bits (187), Expect = 2e-15
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Frame = +1
Query: 244 EKCFKCNRTGHFARDCKEXADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 396
E CF C+ H A+ C E ++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 397 GHIARNCPEGGRESATX--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 549
GH +CP + T +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 550 CDEARN 567
C + N
Sbjct: 194 CPDKFN 199
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +1
Query: 322 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDG 501
+ T H R P E C+ C+ HIA+ CPE C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 502 T------KTCYVCGKPGHISREC 552
K CY CG GH C
Sbjct: 118 NNESSEKKLCYNCGDTGHSLSHC 140
Score = 53.6 bits (123), Expect = 9e-08
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Frame = +1
Query: 145 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXAD------ 306
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 307 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEG-GRESA 441
C+ C G GHI++ C ++ P C C H+ ++CP+ +ESA
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESA 203
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 65.7 bits (153), Expect = 2e-11
Identities = 48/157 (30%), Positives = 61/157 (38%), Gaps = 10/157 (6%)
Frame = +1
Query: 112 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 291
A+ F P A S CY C GH + C ++R+ CF C H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 292 KEXADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCP-EGGRESATXT-C 453
+ D CY C TGH A++C S C C GH C E +E C
Sbjct: 205 SKGHD-CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 454 YNCNKSGHI----SRNCPDGTKTCYVCGKPGHISREC 552
Y C GH+ N +CY CG+ GH C
Sbjct: 264 YICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLAC 300
Score = 64.1 bits (149), Expect = 6e-11
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Frame = +1
Query: 103 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 282
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 283 RDCKEXADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 441
C + + S + CY C + GH AR CP GRES
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 442 TXTCYNCNKSGHISRNCPDGTK 507
T CY CN SGH +R CP+ ++
Sbjct: 356 TL-CYRCNGSGHFARECPNSSQ 376
Score = 60.5 bits (140), Expect = 8e-10
Identities = 49/171 (28%), Positives = 66/171 (38%), Gaps = 38/171 (22%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------EXAD-RC 312
CY C +TGH A++C +G + C +C GH CK + D +C
Sbjct: 210 CYICKKTGHRAKDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 313 YRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCP---EGGRESATXT------ 450
Y C GH+ C P SCY C + GH C E E+ + T
Sbjct: 264 YICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFN 320
Query: 451 ------CYNCNKSGHISRNCPDGTKT-----------CYVCGKPGHISREC 552
CY C + GH +R CP+ + CY C GH +REC
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 145 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC---KEXADRCY 315
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 316 RCNGTGHIARE 348
+ T H +R+
Sbjct: 383 ETSTTSHKSRK 393
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 373 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 552
SCY+C + GH + NCP + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 553 -DEARN 567
D+ +N
Sbjct: 224 PDKYKN 229
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 142 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 267
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Frame = +1
Query: 295 EXADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATXTCY 456
+ A+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 457 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 552
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Frame = +1
Query: 238 QREKCFKCNRTGHFARDCKEXAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 381
+ E C +C GH CK +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 382 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCY 516
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 49.2 bits (112), Expect = 2e-06
Identities = 40/143 (27%), Positives = 52/143 (36%), Gaps = 10/143 (6%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTG 333
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 334 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATXTCYNCNKSGHIS 483
EC Q PD S T GH CP+ S + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 484 RNCPDGTKTCYVCGKPGHISREC 552
+ + CY C GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXAD-----RCYR 318
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 319 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHIS 483
C GH +C S P++ S C + E RE + GH
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157
Query: 484 RNCPDGTKTCY 516
CPD + C+
Sbjct: 158 HQCPDSSSVCF 168
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Frame = +1
Query: 145 SSVCYKCNRTGHFARECTQGGVV------------SRDSGFNRQREKCFKCNRTGHFARD 288
S C+ C R GHF +C V DS R +E + GHF
Sbjct: 101 SPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE-EEEGHFEHQ 159
Query: 289 CKEXADRCYR--CNGTGHIARECAQSPDEPS------CYNCNKTGHIARNCPEGGR 432
C + + C++ G I+ + CY C GHIAR+CP +
Sbjct: 160 CPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQ 215
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 142 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADR 309
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 310 CYRCNGTGHIARECAQS 360
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 94 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 213
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 51.6 bits (118), Expect = 4e-07
Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Frame = +1
Query: 169 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIARE 348
+TG F++ ++ RD + QR K + AR + + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 349 CAQSPDEPSCYNCNKTGHIARNCPE-GGRESATXTCYNCNKSGHISRNCP-------DGT 504
+ + C NC + GH CPE G C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 505 KT----CYVCGKPGHISREC 552
T C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 40.3 bits (90), Expect = 9e-04
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXAD--------- 306
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 307 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHI 480
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 481 SRNCP 495
R CP
Sbjct: 373 VRTCP 377
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +1
Query: 451 CYNCNKSGHISRNCPD-GTKT-----CYVCGKPGHISRECDEARN 567
C NC + GH CP+ GT C CG GH R C ++++
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCK--EXADRCYRCNGTGHIARECAQSP 363
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 307 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 417
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 361 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC 492
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 394 TGHIARNCPEGGRESATX-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 546
T +R P G R++ + C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 547 EC 552
C
Sbjct: 135 NC 136
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 145 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 294
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCK--EXADRCYRCNGTGHIARECAQSP 363
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 307 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 417
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 361 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC 492
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 394 TGHIARNCPEGGRESATX-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 546
T +R P G R++ + C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 547 EC 552
C
Sbjct: 94 NC 95
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 145 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 294
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCK--EXADRCYRCNGTGHIARECAQSP 363
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 301 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 417
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 48.0 bits (109), Expect = 4e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 361 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 507
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 406 ARNCPEGGRESATXTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 552
+R+ G C+NC GH +R+C G CY CG+ GHI R C
Sbjct: 45 SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYR 318
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSG 228
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCK--EXADRCYRCNGTGHIARECAQSP 363
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 301 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 417
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 48.0 bits (109), Expect = 4e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 361 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 507
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 406 ARNCPEGGRESATXTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 552
+R+ G C+NC GH +R+C G CY CG+ GHI R C
Sbjct: 56 SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYR 318
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSG 228
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCK--EXADRCYRCNGTGHIARECAQSP 363
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 301 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 417
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 48.0 bits (109), Expect = 4e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 361 PDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 507
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 406 ARNCPEGGRESATXTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 552
+R+ G C+NC GH +R+C G CY CG+ GHI R C
Sbjct: 86 SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYR 318
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSG 228
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEGGR-ESATXTCYNCNKSGHISRNCPDGTKT-------CYV 519
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 520 CGKPGH 537
CG H
Sbjct: 92 CGNQDH 97
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +1
Query: 310 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATXT--CYNCNKS 471
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 472 GH 477
H
Sbjct: 96 DH 97
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +1
Query: 451 CYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 564
CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTG 333
CYKC + GHFAR C VV++ + C+ C+ GH + C R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPN--KRTDQVNPKG 87
Query: 334 H 336
H
Sbjct: 88 H 88
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 505 KTCYVCGKPGHISREC 552
+ CY CGK GH +R C
Sbjct: 34 RACYKCGKLGHFARSC 49
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +1
Query: 202 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRC------------YRCNGTGHIAR 345
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 346 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 432
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 148 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEXADRCYRC 321
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 322 NGTGHIAREC 351
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGGRESATXTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 528
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 529 PGHISREC 552
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.006
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGG 207
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.1 bits (77), Expect = 0.034
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 499 GTKTCYVCGKPGHISRECDE 558
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 424 GGRESATXTCYNCNKSGHISRNCPDG 501
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 202 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIARECAQSPDEP--S 375
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 376 CYNCNKTGHIARNCPEGG 429
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 310 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 489
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 490 CPDG 501
C G
Sbjct: 195 CTSG 198
Score = 47.2 bits (107), Expect = 8e-06
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGV-VSRDSGFNRQRE-----------KCFKCNRTGHFARDCKE 297
C+KC GH AREC+QGG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTS 197
Query: 298 XADR 309
R
Sbjct: 198 GGAR 201
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 373 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 552
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 34.7 bits (76), Expect = 0.045
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 499 GTKTCYVCGKPGHISRECDE 558
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 397 GHIARNCPEGGRESATXTCYNCNKSGHISRNCPDG 501
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 448 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 552
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +1
Query: 316 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 495
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 496 DGTKTCYVCGKPGHISRECDEARN 567
G TCY CG+ HI+ C N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 202 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXAD 306
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.42
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGG 207
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 367 EPSCYNCNKTGHIARNCPEGG 429
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 271 GHFARDCKEXADRCYRCNGTGHIARECAQSPDE 369
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 202 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXAD 306
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.42
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGG 207
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 367 EPSCYNCNKTGHIARNCPEGG 429
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 271 GHFARDCKEXADRCYRCNGTGHIARECAQSPDE 369
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 139 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 243
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 199 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 294
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEG 426
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 511 CYVCGKPGHISRECDEAR 564
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 211 VSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIAREC 351
+ R +G+ + K R G R +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 139 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 243
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 199 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 294
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEG 426
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 511 CYVCGKPGHISRECDEAR 564
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 211 VSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIAREC 351
+ R +G+ + K R G R +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 243
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.078
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCK 294
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.9 bits (69), Expect = 0.32
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 424 GGRESATXTCYNCNKSGHISRNC 492
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 307 RCYRCNGTGHIAREC 351
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGG 429
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 511 CYVCGKPGHISREC 552
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.008
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 238 QREKCFKCNRTGHFARDC 291
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 337 IARECAQSP-DEPSCYNCNKTGHIARNCP 420
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 493 PDGTKTCYVCGKPGHISREC 552
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 154 CYKCNRTGHFAREC 195
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 9/40 (22%)
Frame = +1
Query: 217 RDSGFNRQREK---------CFKCNRTGHFARDCKEXADR 309
RD G++R R + CFKC + GHFAR+C + R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVSRDSG 228
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 409 RNCPEGGRESATXTCYNCNKSGHISRNCP 495
R+ P GGR C+ C K GH +R CP
Sbjct: 108 RSRPSGGRGGGD--CFKCGKPGHFARECP 134
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 499 GTKTCYVCGKPGHISREC 552
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +1
Query: 376 CYNCNKTGHIARNCP-EGGRE 435
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 199 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIAREC 351
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 250 CFKCNRTGHFARDCKEXADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 420
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.5 bits (73), Expect = 0.10
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = +1
Query: 229 FNRQREKCFKCNRTGHFARDCKEXADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 402
F R+ E +G A + +E C+ C GH R+C + D +
Sbjct: 575 FARRLEAMKSIMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRD 627
Query: 403 IARNCP-EGGRESATXTCYNCNKSGHISRNCPD 498
+ +N GRE A+ C C + H + CP+
Sbjct: 628 LVQNISVRNGREEASSLCIRCFQLSHWAATCPN 660
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 394 TGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKT 510
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRD---LICFYCGKKGHCLRDCLEVTDT 623
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 469 SGHISRNCPDGTKT--CYVCGKPGHISRECDE 558
SG ++ N + + C+ CGK GH R+C E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +1
Query: 151 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 291
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.026
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 154 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 243
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 202 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 294
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 427 GRESATXTCYNCNKSGHISRNC 492
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 307 RCYRCNGTGHIAREC 351
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 511 CYVCGKPGHISREC 552
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGG 429
CY C ++GH AR C G
Sbjct: 98 CYECGESGHFARECRSRG 115
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.045
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 244 EKCFKCNRTGHFARDC 291
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.18
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGG 207
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.24
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 367 EPSCYNCNKTGHIARNCPEGG 429
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 424 GGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 561
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 304 DRCYRCNGTGHIAREC 351
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 34.3 bits (75), Expect = 0.059
Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 11/148 (7%)
Frame = +1
Query: 142 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEXADRCYR 318
+S Y N T E GG + G + +R C++C GH + C
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 319 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXT------CYNCNKSGH 477
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 478 ISRNCPDG---TKTCYVCGKPGHISREC 552
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 32.3 bits (70), Expect = 0.24
Identities = 22/105 (20%), Positives = 35/105 (33%)
Frame = +1
Query: 238 QREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 417
+R C++C GH + C + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 418 PEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 552
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 451 CYNCNKSGHISRNCPD 498
CY C + GH+S CP+
Sbjct: 576 CYECGEKGHLSSACPN 591
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +1
Query: 376 CYNCNKTGHIARNC-------PEGGRESATXTCYNCNKSGHISRNCPDG 501
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 0.96
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +1
Query: 310 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 444
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 382 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 507
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 457 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 561
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 307 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 429
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 430 RESATXTCYNCNKSGHISRNCPD 498
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 2.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 508 TCYVCGKPGHISRECDEAR 564
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 373 SCYNCNKTGHIARNCPE 423
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 32.7 bits (71), Expect = 0.18
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 250 CFKCNRTGHFARDCKEXA 303
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 433 ESATXTCYNCNKSGHISRNCP 495
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 0.96
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 511 CYVCGKPGHISREC 552
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQGGVVS 216
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 489
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.32
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 238 QREKCFKCNRTGHFARDCK 294
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 337 IARECAQSPDEPS-CYNCNKTGHIARNC 417
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 481 SRNCPDGTKTCYVCGKPGHISREC 552
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 418 PEGGRESATXTCYNCNKSGHISRNC 492
P + A CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.73
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 151 VCYKCNRTGHFAREC 195
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 250 CFKCNRTGHFARDC--KEXAD 306
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 0.96
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 376 CYNCNKTGHIARNC 417
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 310 CYRCNGTGHIAREC 351
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 471
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 307 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 429
RC+ C G H REC + D + + K RN G
Sbjct: 242 RCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 316 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATXTCYNCNKSGHIS 483
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 484 RNCP 495
CP
Sbjct: 327 MYCP 330
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +1
Query: 241 REKCFKCNRTGHFARDC---------KEXADRCYRCNGTGHIAREC 351
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 0.55
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +1
Query: 295 EXADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATXTCYNCN 465
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 466 KSGHISRNCPD----GTKTCYVCGKPGHI 540
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 367 EPSCYNCNKTGHIARNCPEGGRESAT 444
E +CY C + GHIA+ CP RE+ T
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTT 247
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 448 TCYNCNKSGHISRNCPDGTKTCYV 519
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 310 CYRCNGTGHIAREC 351
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.73
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 283 RDCKEXAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYN 459
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 460 CNKS 471
C S
Sbjct: 181 CKSS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +1
Query: 451 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 552
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEGGRE-SATXTCYNCNKSGHISRNCP 495
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +1
Query: 451 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 552
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEGGRE-SATXTCYNCNKSGHISRNCP 495
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 316 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 429
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 151 VCYKCNRTGHFARECTQGG 207
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 124 SKPIAMSSSVCYKCNRTGHFAREC 195
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.96
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 151 VCYKCNRTGHFARECTQGG 207
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 304 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATXTCYNCNKSGH 477
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 478 ISRNC 492
IS+ C
Sbjct: 282 ISKPC 286
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Frame = +1
Query: 343 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESATXTCYNCNKSGHISR--------N 489
R C + C NC H +C E GRE T C H +
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 490 CPDGTKTCYVCG 525
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 442 TXTCYNCNKSGHISRNCPD 498
T C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGG 429
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 415 CPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 561
CP G E A + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 442 TXTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 534
T C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 424 GGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEARNXP 573
G + + + N S I + CY CG GH+S EC + + P
Sbjct: 125 GRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGP 174
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 112 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 222
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPE 423
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 307 RCYRCNGTGHIARECAQS 360
RCY C GH++ EC ++
Sbjct: 153 RCYECGDEGHLSYECPKN 170
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 202 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 291
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 507
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 307 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 432
RC+ C H REC + D + N + RN G R
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCKEXADRCYRCNGTGHIARECAQSPDE--PSCY 381
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 364 DEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 507
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 307 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 432
RC+ C H REC + D + N + RN G R
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 247 KCFKCNRTGHFARDCKEXADRCYRCNGTGHIARECAQSPDE--PSCY 381
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 397 GHIARNCPEGGRESATXTCYNCNKSGHISRNCP 495
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCG 525
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 337 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 489
++R+ ++S E +C+ C + GH +CP E Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 202 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 291
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 363 GRAVMLQLQQDGPHRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQ 506
G +V+ LQ DGPH ++R G A +L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 451 CYNCNKSGHISRNCPDGTKT 510
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 376 CYNCNKTGHIARNCP 420
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 139 MSSSVCYKCNRTGHFAREC 195
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 292 KEXADRCYRCNGTGHIARECAQSP 363
K + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 250 CFKCNRTGHFARDC 291
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 154 CYKCNRTGHFARECTQG 204
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +1
Query: 310 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 417
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Frame = +1
Query: 370 PSCYNCNKTGHIARNCPEGGRESAT-----------XTCYNCNKSGHISRNC 492
P C++C GHI C RE CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +1
Query: 124 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEXA 303
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 304 DRCYRCNGTGHIAREC 351
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 537
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 537
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 487 CGRCGRTCCSYSRXASQTPAPPRDSSVRC 401
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 292 KEXADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKS 471
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 472 GHIS 483
G ++
Sbjct: 128 GSLT 131
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +1
Query: 376 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 537
C +C++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 229 FNRQREKCFKCNRTGHFARDCK 294
F + KCF C + GH A DC+
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCE 280
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 387 QQDGP-HRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 551
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +1
Query: 343 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKTCYVC 522
R ++ D PSC CN+ G A CP G C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 523 GKPGHISR 546
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +1
Query: 310 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 420
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 310 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXT 450
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 310 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATXT 450
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +1
Query: 319 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 420
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 244 EKCFKCNRTGHFARDCKEXADRCYRCNGTGHIAREC 351
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 502 CRRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSC 389
C C RC CS S S T PP S+ C P C
Sbjct: 327 CEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = -2
Query: 406 RCGPSCCSCNMTARPGSVRTRAL-CA--QCRYICSNGQPXPCNPSQSVLCGC 260
RCG SC G V R L C CR IC +G+ PC C C
Sbjct: 232 RCGHKQFSC------GDVCERVLDCNIHNCREICHDGECPPCRERAVYKCSC 277
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 382 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 489
NCN H A E G E SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 382 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 489
NCN H A E G E SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 382 NCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 489
NCN H A E G E SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +1
Query: 226 GFNRQREKCFKCNRTGHFARDCKEXADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 390
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 391 KTGHIARNCPEGGRESATXT 450
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
gibberellin-responsive protein 2 identical to SP|P46688
Gibberellin-regulated protein 2 precursor {Arabidopsis
thaliana}
Length = 99
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 205 GVVSRDSGFNRQREKCFKCNRTGHFARDCKEXADRC 312
GVV D G R +++C K +RT R C RC
Sbjct: 35 GVVKIDCG-GRCKDRCSKSSRTKLCLRACNSCCSRC 69
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 304 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATXTCYNCNKSG 474
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQVM-TCSSCNGTG 274
Query: 475 HISRNC 492
IS C
Sbjct: 275 EISTPC 280
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 136 AMSSSVCYKCNRTGHFARECTQGGV-VSRDS 225
A ++S C KC + GH+ EC V +SR S
Sbjct: 94 ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 340 LCAQCRYICSNGQPXPCNPSQSVLCG 263
LC CR +CS + CN V CG
Sbjct: 386 LCTACRRLCSGFRYECCNIKLDVRCG 411
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 331 GHIARECAQSP-DEPSCYNCNKTGHIARNC 417
G+ AR P P C NC + GH+ C
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRC 328
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 238 QREKCFKCNRTGHFARDC 291
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 363 GRAVMLQLQQDGPHRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQ 506
G +V+ Q DGPH ++R G A +L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 363 GRAVMLQLQQDGPHRTELSRGGAGVCDAXLL*LQQVRPHLPQLSRRHQ 506
G +V+ Q DGPH ++R G A +L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 310 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 420
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 445 ASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCA 332
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At1g30660.1 68414.m03749 toprim domain-containing protein contains
Pfam profile PF01751: Toprim domain
Length = 321
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 463 NKSGHISRNCPDGTKTCYVCGK 528
++ G ++NCP G ++C +C K
Sbjct: 43 SEQGIDAQNCPPGVRSCLICPK 64
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Frame = +1
Query: 169 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEXADRCYRC 321
R+ + C + G ++ + ++E C K + A + C E +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 322 NGTGHIARECA 354
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,590
Number of Sequences: 28952
Number of extensions: 227015
Number of successful extensions: 1387
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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