Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D20
         (522 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   5.0  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   5.0  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   5.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.7  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 106 DGKTFTFLNSKCEAAHLMRRNPR*SNM 186
           D   F  L+S CE  +++ R P+  N+
Sbjct: 58  DKSIFAKLDSICEDCYMLFREPQLHNL 84


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 106 DGKTFTFLNSKCEAAHLMRRNPR*SNM 186
           D   F  L+S CE  +++ R P+  N+
Sbjct: 58  DKSIFAKLDSICEDCYMLFREPQLHNL 84


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 106 DGKTFTFLNSKCEAAHLMRRNPR*SNM 186
           D   F  L+S CE  +++ R P+  N+
Sbjct: 58  DKSIFAKLDSICEDCYMLFREPQLHNL 84


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 212 KKGQEEEQAKKRTXRTQK 265
           ++ +E +Q KKR   TQK
Sbjct: 207 RRAKERKQVKKREEVTQK 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,646
Number of Sequences: 336
Number of extensions: 1792
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)