Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D20
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 71 8e-14
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 71 8e-14
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 49 5e-07
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.2
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.0
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 3.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 25 9.0
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 71.3 bits (167), Expect = 8e-14
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+++WTVLYRR KKG EE AKKRT RT K QR IVGA+L I KRN +PEV
Sbjct: 48 RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
Score = 58.4 bits (135), Expect = 6e-10
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +1
Query: 34 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 174
MK+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 71.3 bits (167), Expect = 8e-14
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+++WTVLYRR KKG EE AKKRT RT K QR IVGA+L I KRN +PEV
Sbjct: 48 RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
Score = 58.4 bits (135), Expect = 6e-10
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +1
Query: 34 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 174
MK+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 48.8 bits (111), Expect = 5e-07
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 34 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 174
M++ C + +YPGHG V+ D K F F SKC M+RNPR
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPR 47
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -1
Query: 306 IMSLSEAPTIARWNFWV---LXVRFFACSSSWPFLNLRLYRTVHVTLARI 166
I++L A W W + V S W L+ L + H+TLA+I
Sbjct: 600 IVALQNMDPAAGWGEWFAVSIPVSLLCIFSIWFLLSFGLLKDEHITLAKI 649
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 144 SRPFDEEESSLK*HGLSCTGASSKRAKRKNKQRNV 248
S+ F EE L G +CT S++ ++KN + N+
Sbjct: 421 SQFFQEEMIHLLEMGEACTSRESQKTRKKNLKENI 455
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 120 EGFSIHFNHGLAMAWIYFVSTI 55
+GF H+ G A+ W+YF + +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 372 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 277
+ L ACS C + TS I S S AP++
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSM 136
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 59 VDTKYIQAMARPWLKWM 109
V+ K+IQ + + W+KW+
Sbjct: 137 VEQKWIQFLHKSWMKWL 153
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 161 GGILAKVTWTVLYRRKFKKGQ 223
GG++ KV W + RRK++ Q
Sbjct: 13 GGLVHKVPWRLSQRRKYRHRQ 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,858
Number of Sequences: 5004
Number of extensions: 29505
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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