Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D20
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    56   1e-08
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    56   1e-08
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    55   3e-08
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    48   6e-06
03_05_0593 - 25959013-25959789                                         33   0.11 
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840...    27   9.1  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173 AKVTWTVLYRRKFKKGQEEEQAKKRTXRTQK-FQRAIVGASLSDIMAKRNMKPEV 334
           AK+TWT +YR++ KK    E  KKR   T+K + R+IVGASL  I  KR  KPEV
Sbjct: 49  AKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +1

Query: 34  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNP 171
           +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P
Sbjct: 3   LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKP 48


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173  AKVTWTVLYRRKFKKGQEEEQAKKRTXRTQK-FQRAIVGASLSDIMAKRNMKPEV 334
            AK+TWT +YR++ KK    E  KKR   T+K + R+IVGA+L  I  KR+ KPEV
Sbjct: 1059 AKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 46   LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNP 171
            LC +SG KIYPG G   ++ D + F F NSKC+     R  P
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKP 1058


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173 AKVTWTVLYRRKFKKGQEEEQAKKRTXRTQK-FQRAIVGASLSDIMAKRNMKPEV 334
           AK+TWT +YR++ KK    E  KKR   T+K + R+IVGA+L  I  KR  KPEV
Sbjct: 75  AKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +1

Query: 28  VKMKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNP 171
           +K+   LC +SG KIYPG G   ++ D + F F NSKC+     R  P
Sbjct: 27  LKVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKP 74


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +1

Query: 34  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 174
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPR
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPR 47


>03_05_0593 - 25959013-25959789
          Length = 258

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 294 SEAPTIARWNFWVLXVRFFACSSSWP-FLNLRLYRTVHVTLARIPPHQMG 148
           +E P+ +     +L  + F CSS+ P FL+ R  R  HV +A  PP   G
Sbjct: 46  AEGPSSSMSPTSILETKQFCCSSAMPPFLSERSLRKAHVEMAAAPPEPAG 95


>05_07_0285 +
           28982502-28982782,28982888-28982989,28983189-28984006,
           28984594-28985050,28985203-28985242
          Length = 565

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 161 GGILAKVTWTVLYRR-KFKKGQEEEQAK 241
           GGILA    T LYRR ++K+G ++ Q++
Sbjct: 151 GGILATTATTNLYRRQRYKEGMKDIQSQ 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,902
Number of Sequences: 37544
Number of extensions: 195989
Number of successful extensions: 485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)