Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D20
(522 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 82 3e-16
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 81 5e-16
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 79 3e-15
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 78 5e-15
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3) 29 3.1
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42) 28 5.4
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 81.8 bits (193), Expect = 3e-16
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +1
Query: 34 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQ 213
MK+ LC YSGYKIYPGHGK V+ DGK F FLN +CE A LMRRNPR + + +
Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60
Query: 214 KGPRGRTSKETYXKDPK 264
KG + SK+ ++ K
Sbjct: 61 KGTQEEVSKKRTRRNIK 77
Score = 81.0 bits (191), Expect = 5e-16
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYRRK KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 48 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 81.0 bits (191), Expect = 5e-16
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYRRK KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 112 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKETYXKDPK 264
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 81.0 bits (191), Expect = 5e-16
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYRRK KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 112 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKETYXKDPK 264
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 81.0 bits (191), Expect = 5e-16
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYRRK KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 112 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKETYXKDPK 264
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 81.0 bits (191), Expect = 5e-16
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYRRK KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 63 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 115
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 100 KVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKETYXKDPK 264
K GK F +LN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 38 KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 92
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 81.0 bits (191), Expect = 5e-16
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYRRK KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 112 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKETYXKDPK 264
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIK 57
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYRR KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 112 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKETYXKDPK 264
K F FLN +CE A LMRRNPR + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIK 57
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 77.8 bits (183), Expect = 5e-15
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +2
Query: 176 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
+VTWTVLYR K KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 28 EVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 112 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKETYXKDPK 264
K F FLN +CE A LMRRNPR + + +KG + SK+ ++ K
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIK 57
>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/41 (65%), Positives = 33/41 (80%)
Frame = +2
Query: 212 KKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRNMKPEV 334
KKG +EE +KKRT R KFQR++ GASL +I+AKRN KPEV
Sbjct: 2 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42
>SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 79 GHGKTM--VKV-DGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQ 207
G GKT VK+ +G+T T L + + A R NPR N PV AQ
Sbjct: 57 GSGKTEWDVKMFEGRTITVLTPENDLADDHRNNPRLQNNRKPVNAQ 102
>SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)
Length = 368
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 79 GHGKTM--VKV-DGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQ 207
G GKT VK+ +G+T T L + + A R NPR N PV AQ
Sbjct: 309 GSGKTEWDVKMFEGRTITVLTPENDLADDHRNNPRLQNNRKPVNAQ 354
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 243 FFACSSSWPFLNLRLYRTVHVTLARIP 163
+FAC+ P N + T HVTL IP
Sbjct: 2679 YFACTRDLPISNFDVISTRHVTLQAIP 2705
>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 1088
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 79 GHGKT--MVKV-DGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQ 207
G GKT VK+ +G+T L + + A R NPR N PV AQ
Sbjct: 737 GSGKTEWAVKMFEGRTIAVLTPENDLADDHRNNPRLQNSGKPVNAQ 782
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,273
Number of Sequences: 59808
Number of extensions: 221045
Number of successful extensions: 512
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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