Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D20
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    63   1e-10
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    28   4.7  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 29/66 (43%), Positives = 39/66 (59%)
 Frame = +1

Query: 34  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQ 213
           MK+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR        + + +
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 214 KGPRGR 231
           KG  G+
Sbjct: 61  KGTHGQ 66



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 179 VTWTVLYRRKFKKG---QEEEQAKKRTXRTQKFQRAIVGASLSDIMAKRN 319
           + WTVLYR K KKG   QE+   KK     Q   RA+ G SL  I+AKRN
Sbjct: 49  IRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 34  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 174
           M+I  C +    IYPGHG   V+ D   F F  S+C      ++NPR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPR 47


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 PVQAQVQKGPRGRTSKETYXKDPKVPTCD 279
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 PVQAQVQKGPRGRTSKETYXKDPKVPTCD 279
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTAD 488


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 PVQAQVQKGPRGRTSKETYXKDPKVPTCD 279
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,398,999
Number of Sequences: 27780
Number of extensions: 168217
Number of successful extensions: 358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)