Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D20
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    52   2e-07
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            52   2e-07
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           48   4e-06
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ...    32   0.20 
At2g35310.1 68415.m04330 transcriptional factor B3 family protei...    27   7.7  
At1g30370.1 68414.m03713 lipase class 3 family protein similar t...    27   7.7  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173 AKVTWTVLYRRKFKKGQEEEQAKKRTXRTQK-FQRAIVGASLSDIMAKRNMKPEV 334
           +K+ WT +YR++ KK   +E  K+R   T+K + R+IVGA+L  I  KR  KPEV
Sbjct: 49  SKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +1

Query: 34  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 144
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCK 39


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 173 AKVTWTVLYRRKFKKGQEEEQAKKRTXRTQK-FQRAIVGASLSDIMAKRNMKPEV 334
           +K+ WT +YR++ KK   +E  K+R   T+K + R+IVGA+L  I  KR  KPEV
Sbjct: 49  SKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +1

Query: 34  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 144
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCK 39


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 21/47 (44%), Positives = 26/47 (55%)
 Frame = +1

Query: 34  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 174
           M++  C +    IYPGHG   V+ D K F F  SKC     M+RNPR
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPR 47


>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 815

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 312 LAIMSLSEAPTIARWNFWVLXVRFFACSSSWPFLNLRLYRTVHVTLARIPPHQMG 148
           +A M   +  TIA   F+   +  F+C SS P L    +  V VTL  IP  Q+G
Sbjct: 572 IAEMKKLKVLTIANHGFYPARLSNFSCLSSLPNLKRIRFEKVSVTLLDIPQLQLG 626


>At2g35310.1 68415.m04330 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 288

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 197 YRRKF---KKGQEEEQAKKRTXRTQKFQRAIVGASLSDI 304
           Y+RK    KK  EE    KRT +    QR   GAS S +
Sbjct: 157 YKRKLNFEKKKAEESHNSKRTDKVFSVQRESAGASSSSV 195


>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile: PF01764: Lipase
          Length = 529

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 82  HGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMD 189
           HGKT+VKV     +  NSK E     + +     MD
Sbjct: 269 HGKTVVKVQSGFLSIYNSKSELTRYNKESASEQTMD 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,979,247
Number of Sequences: 28952
Number of extensions: 161544
Number of successful extensions: 387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)