Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D19
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 29 0.33
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 4.1
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 4.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 5.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 5.4
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 7.1
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.4
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.4
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.4
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 9.4
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 312 DETNPPKQTPTNAPHNVDCTTVCSSGETSSN 220
DE+ + P N P NV TT +SG TSS+
Sbjct: 400 DESTSRRPKPKNKPSNVTSTTSYTSGMTSSS 430
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 102 KTWRQPDHRSDHFDKIPFPF**QQTRQD 19
K W+ +H S H DK P P T+ D
Sbjct: 221 KPWKHEEHCSCHHDKFPRPVPHNGTKPD 248
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 102 KTWRQPDHRSDHFDKIPFPF**QQTRQD 19
K W+ +H S H DK P P T+ D
Sbjct: 250 KPWKHEEHCSCHHDKFPRPVPHNGTKPD 277
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 312 DETNPPKQTPTNAPHNVDCTTVCS-SGETSS 223
D NPP TP N D + V S SG T++
Sbjct: 214 DSPNPPAATPATVADNDDLSIVSSDSGNTTA 244
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 125 RNENDYXVLNRPLPG 169
+NE+DY + NR LPG
Sbjct: 287 QNEDDYTLFNRQLPG 301
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 300 PPKQTPTNAPHNVDCTTVCSSGETSSNSFFLYMALTR 190
PP+ +P N+ VC G TS ++F +A R
Sbjct: 1401 PPRVSPFKPEENMIIGNVCLYGATSGHAFISGVAAER 1437
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 203 MYKKNEFDEVSPEL 244
+Y KNEFDE+S EL
Sbjct: 447 LYWKNEFDELSEEL 460
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 237 LNCIQLCNPHCAVHLLVFVSEDLSHL 314
L C +L PHC +LL V + +++
Sbjct: 24 LECSRLRGPHCGTYLLKVVGTNATYV 49
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 237 LNCIQLCNPHCAVHLLVFVSEDLSHL 314
L C +L PHC +LL V + +++
Sbjct: 24 LECSRLRGPHCGTYLLKVVGTNATYV 49
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 237 LNCIQLCNPHCAVHLLVFVSEDLSHL 314
L C +L PHC +LL V + +++
Sbjct: 25 LECSRLRGPHCGTYLLKVVGTNATYV 50
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 304 KSSETNTNKCTAQCGLHNCMQFRRNFVEFVFF 209
+ +ET+TN CT G N R V+ +F+
Sbjct: 95 EGTETDTNACTVVVGCWNKWLERVEIVQNIFY 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,635
Number of Sequences: 5004
Number of extensions: 44230
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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