Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D19
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475...    31   0.44 

>03_01_0648 -
           4749150-4749275,4749902-4749986,4750761-4750861,
           4750933-4751191,4751382-4751434,4752828-4752990,
           4753181-4754616
          Length = 740

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 66  NDPNGDQVVSKFCLTNFFVKEMKMI 140
           NDPNG+ V+ K CL NF  +E K+I
Sbjct: 512 NDPNGNHVIQK-CLKNFDAEENKII 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,632,746
Number of Sequences: 37544
Number of extensions: 284985
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)