Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D19
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical ...    58   3e-09
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    31   0.69 
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    27   8.5  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    27   8.5  

>AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.3 protein.
          Length = 281

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 34/110 (30%), Positives = 52/110 (47%)
 Frame = +2

Query: 173 PQTGWDRVKAMYKKNEFDEVSPELHTVVQSTLCGAXXXXXXXXXXSSREAYLYFIENNQA 352
           P TGW+R+K++Y++    E       VV+ +  G            +R AY     NN  
Sbjct: 62  PMTGWERLKSIYERENSMEKDVTFR-VVRMSFLGGFLVGGATGYAQARHAYE---TNNVG 117

Query: 353 TAYKTVXDAXKKLQXYVTIGFAKGAYKWGWKLTIFTGMFXLIATTISAYR 502
             Y +  DA K+   Y  + FAKG +  G+K  + +G    +AT I+AYR
Sbjct: 118 RKYLSPSDAVKRKIDYAIVRFAKGGFGVGFKCALISGSIVFLATHITAYR 167


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -1

Query: 535 CSCVXDECCISTICRYCCG-YQXEH 464
           C C    CC    C +CCG Y+ +H
Sbjct: 145 CCCCGCMCCCQCCCNFCCGKYKPKH 169


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 182 GWDRVKAMYKKNEFDEVSPELHTVVQS 262
           GWDRV  +Y KNE D  S  ++ V +S
Sbjct: 175 GWDRVALLYFKNELDYCSSVVNDVEKS 201


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
 Frame = -1

Query: 535 CSCVXDEC---CISTICRYCCGYQXEHSCKNS----*FPSPLVGTFG--KSNCYIVLQFF 383
           C+    +C   C + IC   C  Q   SC NS        P     G  +S+C       
Sbjct: 105 CNQCQQQCISSCATPICAQSCNNQCSSSCGNSAPQIVVLQPQQNQCGSCQSSCQQTCPTC 164

Query: 382 XCIAYCFISGCLIIFNKIQVGFSR*DKSSETN-TNKCTAQCGLHNCMQ 242
            C + C    C    N  Q+   + D S  +N  N+C++ C    C+Q
Sbjct: 165 NCQSAC-APACGGNNNNQQIIVVQQDNSCSSNCNNQCSSSCSTPICIQ 211


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 189 IGLKPCIKKTNSTKFLLNCIQLCNPHCAVHLLVFVSE 299
           +  +PC  K  + K  L+C QL  P    H+ V+ ++
Sbjct: 86  VNYQPCTSKGIANKLFLSCCQLYVPEECHHMCVYETD 122


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 280 CWCLFRRICLISRSLPVFY*K*SSNRL*NSXRCKXKTAXLCNNWICQRCLQVGME 444
           C   FRR+CL  RS   F  K   +        K KT   C     QRCL VGM+
Sbjct: 70  CKTFFRRMCLSGRS---FSCKLDRDCF---DLTKRKTPAKCRACRLQRCLSVGMD 118


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 280 CWCLFRRICLISRSLPVFY*K*SSNRL*NSXRCKXKTAXLCNNWICQRCLQVGME 444
           C   FRR+CL  RS   F  K   +        K KT   C     QRCL VGM+
Sbjct: 70  CKTFFRRMCLSGRS---FSCKLDRDCF---DLTKRKTPAKCRACRLQRCLSVGMD 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,855,934
Number of Sequences: 27780
Number of extensions: 266520
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)