Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D19
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13240.1 68417.m02059 hypothetical protein contains Pfam prof...    30   1.1  
At3g24620.1 68416.m03092 expressed protein contains Pfam profile...    29   2.6  
At5g22730.1 68418.m02655 F-box family protein contains F-box dom...    28   3.4  
At4g18490.1 68417.m02742 hypothetical protein                          27   5.9  
At5g13210.1 68418.m01516 expressed protein                             27   7.9  

>At4g13240.1 68417.m02059 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 517

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 110 QLFRERNENDYXVLNRPLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQS 262
           +LF ER E    +L +  PG PQ+  D  K  Y K+    V      +++S
Sbjct: 353 ELFEERAETILVLLKQKFPGLPQSSLDISKIQYNKDVGHAVLESYSRILES 403


>At3g24620.1 68416.m03092 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315); expression
           supported by MPSS
          Length = 523

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 110 QLFRERNENDYXVLNRPLPGGPQTGWDRVKAMYKKNEFDEVSPELHTVVQS 262
           +LF ER E    +L +  PG PQ+  D  K  + K+    V      +++S
Sbjct: 364 ELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILES 414


>At5g22730.1 68418.m02655 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 466

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 247 MQFRRNFVEFVFFIHGFNPIPACLRASRQRS 155
           M+  ++FVEF+++   F+P+P     SR ++
Sbjct: 320 MKISQHFVEFLYYYKDFDPLPQFCNLSRLKA 350


>At4g18490.1 68417.m02742 hypothetical protein 
          Length = 594

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 306 TNPPKQTPTNAPHNVDCTTVCSSGETSSN---SFFLYMALTRSQP 181
           ++PPK+       ++DC  +C+S ++  +    F L + +TR  P
Sbjct: 16  SSPPKKGSKTTTKSMDCEEICASSKSDKSDDLDFGLDLPITRQVP 60


>At5g13210.1 68418.m01516 expressed protein
          Length = 673

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 140 YXVLNRPLPGGPQTGWDR----VKAMYKKNEFDEVSPEL 244
           Y  L +P P  P  GW+     +   YK+N + +V PE+
Sbjct: 573 YAFLRQP-PSNPSNGWETDYEVIVRKYKQNGYGDVVPEI 610


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,977,265
Number of Sequences: 28952
Number of extensions: 236866
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)