Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D16
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   160   9e-41
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   160   1e-40
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.27 
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    28   0.83 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   2.5  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   7.8  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  160 bits (389), Expect = 9e-41
 Identities = 73/102 (71%), Positives = 88/102 (86%)
 Frame = +3

Query: 63  AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYY 242
           +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRKSE+EYY
Sbjct: 14  SKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYY 73

Query: 243 ALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 368
           A+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 74  AMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  160 bits (388), Expect = 1e-40
 Identities = 73/104 (70%), Positives = 87/104 (83%)
 Frame = +3

Query: 57  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 236
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+E
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63

Query: 237 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 368
           YYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 64  YYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 69  KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 194
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 177 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 311
           ++ +VI++K   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 48  SKMVAAKK-QKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 218
           +K +A KK  KK ++++        K      G K+ +K +R+G+  LVI+A +  P+
Sbjct: 29  AKPLAPKKLNKKMMKTVKK----ASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPM 82


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  VLLREDSLAFTLPKWLQQRNRKRPSSQLTPAL 108
           VL +E  L ++L +WL   N K PS+Q +  L
Sbjct: 124 VLAKE--LGYSLIEWLNPMNLKEPSNQESDTL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,328
Number of Sequences: 5004
Number of extensions: 30889
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)