Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D16
(475 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi... 173 7e-44
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi... 172 9e-44
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi... 170 4e-43
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 28 2.8
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot... 28 3.7
At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containi... 28 3.7
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot... 27 4.9
At4g18820.1 68417.m02778 expressed protein 27 6.5
>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
to GI:6984132 from [Euphorbia esula]
Length = 112
Score = 173 bits (420), Expect = 7e-44
Identities = 79/109 (72%), Positives = 92/109 (84%)
Frame = +3
Query: 54 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 233
MVAAKK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 234 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 380
EYYA+LAK GVHHY+ NN++LGTACGKY+RV L+I DPGDSDII +LP
Sbjct: 61 EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109
>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
luteus]
Length = 112
Score = 172 bits (419), Expect = 9e-44
Identities = 79/109 (72%), Positives = 91/109 (83%)
Frame = +3
Query: 54 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 233
MVA KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 234 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 380
EYYA+LAK GVH Y+GNN++LGTACGKY+RV L+I DPGDSDII TLP
Sbjct: 61 EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109
>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
to ribosomal protein L30 GI:388034 from [Homo sapiens]
Length = 112
Score = 170 bits (414), Expect = 4e-43
Identities = 77/109 (70%), Positives = 91/109 (83%)
Frame = +3
Query: 54 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 233
MV KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60
Query: 234 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 380
EYYA+LAK GVHHY+GNN++LGTACGKY+RV L+I DPGDSDII ++P
Sbjct: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 84 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 215
I + +++ KS Y GY Q+ +T R + KL+ I K PP
Sbjct: 7 IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50
>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 435
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 123 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 206
+GKY G + TLK L G + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325
>At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 689
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +2
Query: 110 LGDEIGKILLRIQ----ANFENSSTRQSKAGY 193
LG E+GKILLRI AN+ S +AGY
Sbjct: 500 LGKEVGKILLRIDAKNPANYVMMSNLYGQAGY 531
>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 434
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 123 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 206
+GKY G + TLK L G + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324
>At4g18820.1 68417.m02778 expressed protein
Length = 1111
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 356 VTRVCDGECAHSVVFSACCS*FNVVPAVVVNTC 258
+++V D VVF CS +V+P V+++ C
Sbjct: 565 LSKVVDRAAPRHVVFILVCSSLDVLPHVIISRC 597
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,947,126
Number of Sequences: 28952
Number of extensions: 167702
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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