Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D15
(652 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 269 4e-71
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 260 2e-68
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 134 1e-61
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 227 2e-58
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 198 1e-49
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 194 2e-48
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 187 2e-46
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 153 1e-45
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 184 2e-45
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 173 2e-42
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 157 3e-37
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 111 1e-23
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 103 5e-21
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 95 1e-18
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 95 1e-18
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 94 3e-18
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 93 5e-18
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 88 1e-16
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 88 2e-16
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 87 3e-16
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 87 3e-16
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 87 5e-16
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 84 2e-15
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 83 6e-15
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 80 4e-14
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 80 5e-14
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 79 1e-13
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 78 2e-13
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 75 2e-12
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 73 5e-12
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 64 2e-09
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 64 2e-09
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 62 8e-09
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 49 8e-05
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.068
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 36 0.84
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 35 1.9
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_A7SI31 Cluster: Predicted protein; n=1; Nematostella ve... 34 3.4
UniRef50_UPI00015BAF49 Cluster: histidinol dehydrogenase; n=1; I... 33 4.5
UniRef50_A2DJR1 Cluster: PIKK family atypical protein kinase; n=... 33 5.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 269 bits (659), Expect = 4e-71
Identities = 123/165 (74%), Positives = 140/165 (84%)
Frame = +1
Query: 157 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 336
P + P LIFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK
Sbjct: 35 PHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
Query: 337 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 516
T E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDPLI
Sbjct: 95 TGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLI 154
Query: 517 KVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
NDS+Q+DIA+ I D+IKF+SGNLCMITGGRNLGRVGT+V+RE
Sbjct: 155 HANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199
Score = 93.9 bits (223), Expect = 3e-18
Identities = 42/47 (89%), Positives = 43/47 (91%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL F
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIF 47
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 260 bits (638), Expect = 2e-68
Identities = 121/185 (65%), Positives = 140/185 (75%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
PKH L P P +IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 277 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 456
KVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K
Sbjct: 75 KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
Query: 457 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGT 636
+P+LVTHD RTIRYPDPLIKVND+IQ+D+ T I DFIKF++GNLCM+TGG NLGR+G
Sbjct: 135 GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGV 194
Query: 637 IVSRE 651
I +RE
Sbjct: 195 ITNRE 199
Score = 91.1 bits (216), Expect = 2e-17
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL F
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIF 47
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 134 bits (324), Expect(2) = 1e-61
Identities = 67/106 (63%), Positives = 73/106 (68%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
PKH L P P +IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 277 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 414
KVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 75 KVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 125 bits (301), Expect(2) = 1e-61
Identities = 51/80 (63%), Positives = 67/80 (83%)
Frame = +1
Query: 412 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGN 591
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T I DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 592 LCMITGGRNLGRVGTIVSRE 651
+CM+TGG NLGR+G I +RE
Sbjct: 212 MCMVTGGANLGRIGVITNRE 231
Score = 89.0 bits (211), Expect = 9e-17
Identities = 39/46 (84%), Positives = 41/46 (89%)
Frame = +3
Query: 57 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL F
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIF 47
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 227 bits (555), Expect = 2e-58
Identities = 109/185 (58%), Positives = 131/185 (70%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
PKH L P P ++ +RNRLKYALT EV+ I+ QR I+VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74
Query: 277 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 456
KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134
Query: 457 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGT 636
+PYL T+DGRTIRYPDPLIK ND+I+LD+ I++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGV 194
Query: 637 IVSRE 651
I +RE
Sbjct: 195 IKNRE 199
Score = 87.0 bits (206), Expect = 3e-16
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 198 bits (482), Expect = 1e-49
Identities = 89/165 (53%), Positives = 117/165 (70%)
Frame = +1
Query: 157 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 336
P P ++ LRNRL YAL G EV IVK R IK+DGK+RTD YP GFMDV+SI +
Sbjct: 35 PHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPR 94
Query: 337 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 516
T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P +
Sbjct: 95 TKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPEL 154
Query: 517 KVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
+ ND+I+L++ T I+DF+KF+ GN M+ GG +GRVG IV RE
Sbjct: 155 QANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKRE 199
Score = 79.0 bits (186), Expect = 9e-14
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPL 44
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 194 bits (473), Expect = 2e-48
Identities = 91/154 (59%), Positives = 115/154 (74%)
Frame = +1
Query: 190 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 369
IFLRNRLKYALTG+EV KI Q IKVDGK+RTD P MDV+SI+K E F LIY +
Sbjct: 56 IFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGI 115
Query: 370 KGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA 549
RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+PD LIKVND+IQ+D+
Sbjct: 116 NRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLE 175
Query: 550 TTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
T I +KF++GNLC++TGG N GR+G I +RE
Sbjct: 176 TGKI-TALKFDTGNLCLVTGGGNWGRIGVITNRE 208
Score = 73.7 bits (173), Expect = 3e-12
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = +3
Query: 45 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 182
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP 54
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 187 bits (455), Expect = 2e-46
Identities = 85/161 (52%), Positives = 115/161 (71%)
Frame = +1
Query: 157 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 336
P P IFLR+RLKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K
Sbjct: 49 PHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGK 108
Query: 337 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 516
+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP +
Sbjct: 109 SNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSV 168
Query: 517 KVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
+V+D+++ +I T + IKF+ G++ M+T G N+GRVGTI
Sbjct: 169 RVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTI 209
Score = 64.5 bits (150), Expect = 2e-09
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = +3
Query: 27 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ F
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIF 61
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 153 bits (371), Expect(2) = 1e-45
Identities = 65/96 (67%), Positives = 80/96 (83%)
Frame = +1
Query: 364 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 543
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 544 IATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
+ T I DF KF++GNLCM+TGG NLGR+G I +RE
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRE 171
Score = 81.4 bits (192), Expect = 2e-14
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL F
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIF 47
Score = 53.2 bits (122), Expect(2) = 1e-45
Identities = 29/61 (47%), Positives = 32/61 (52%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
PKH L P P +IFLRNRLKYALTG+EV KI Q IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDG 74
Query: 277 K 279
K
Sbjct: 75 K 75
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 184 bits (447), Expect = 2e-45
Identities = 83/163 (50%), Positives = 116/163 (71%)
Frame = +1
Query: 157 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 336
P ++ P +I +RN+LKY+ E L I+K+ I VDGKVR D +PAG MDV+SI+
Sbjct: 35 PHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDGKVRADKNFPAGVMDVISIKT 94
Query: 337 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 516
T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LI
Sbjct: 95 TKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLI 154
Query: 517 KVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVS 645
K NDSI LD+ ++DFIKF G+LC++ G N+GR+G ++
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFIN 197
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PL
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPL 44
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 173 bits (422), Expect = 2e-42
Identities = 81/163 (49%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Frame = +1
Query: 157 PTSCASACPWLIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P + P + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV I
Sbjct: 145 PHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRI 204
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 510
EKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P
Sbjct: 205 EKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNP 264
Query: 511 LIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
IK+ D+++ D+ I +F ESGN+C I G N+GRVG I
Sbjct: 265 EIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGII 307
Score = 54.8 bits (126), Expect = 2e-06
Identities = 21/26 (80%), Positives = 26/26 (100%)
Frame = +3
Query: 57 ARGPKKHLKRLNAPKAWMLDKLGGVY 134
ARGPKKHLKR+NAPK+WML+KLGG++
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIW 108
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 157 bits (380), Expect = 3e-37
Identities = 78/168 (46%), Positives = 99/168 (58%)
Frame = +1
Query: 148 QPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 327
+P P P L+ +RNRLKYAL E I++Q L+ VD R D YPAGFMDVV
Sbjct: 29 RPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPRRDGKYPAGFMDVVE 88
Query: 328 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 507
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPD
Sbjct: 89 IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148
Query: 508 PLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
P + D+I ++ +D IK G ++TGG N GR+G IV E
Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVE 196
Score = 73.7 bits (173), Expect = 3e-12
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +3
Query: 69 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPL 41
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 111 bits (267), Expect = 1e-23
Identities = 60/155 (38%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Frame = +1
Query: 178 CPWLIFLRNR-LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFR 354
C L +L +R L+YA E+ I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR
Sbjct: 41 CIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFR 100
Query: 355 LIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSI 534
++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP I + +I
Sbjct: 101 VLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTI 159
Query: 535 QLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
++ T+ ++++I + ++ G+ GRVG I
Sbjct: 160 KISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194
Score = 63.7 bits (148), Expect = 4e-09
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPL 44
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 103 bits (246), Expect = 5e-21
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Frame = +1
Query: 148 QPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 327
+P P + P L+ +RN L YA T E K++ + +VDG VR D +P GFMDV+
Sbjct: 33 RPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIE 92
Query: 328 IEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--R 498
+ T E FR++ Y VK F +H I EE K +++ T L HDGR I R
Sbjct: 93 VVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVR 151
Query: 499 YPDP------LIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVS 645
DP + + D++ + + I IKF G + +I GGRN+GRVG + S
Sbjct: 152 VKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKS 206
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 54 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
MAR G ++ LK L AP+ W + + +A +P GPH + LPL
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPL 45
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 95.5 bits (227), Expect = 1e-18
Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Frame = +1
Query: 151 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P S + P LI LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+SI
Sbjct: 30 PATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVLSI 89
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPD 507
+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 90 DTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDR 148
Query: 508 PLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
I +D + + I I + +K G+ ITGG ++G + TI S E
Sbjct: 149 KDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATIKSIE 196
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 95.1 bits (226), Expect = 1e-18
Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Frame = +1
Query: 151 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P P S S+ P I LR+ YA T E +I+ R+I+VDG+V TD +P G MDV+ I
Sbjct: 36 PGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVGLMDVLHI 95
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI----- 495
+ +R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 96 IPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKG 155
Query: 496 --RYPDPL-IKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
Y + K D++ + I I+ + FE G L ++ GRN+G +G I
Sbjct: 156 SEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVDGRNVGFMGRI 206
Score = 37.9 bits (84), Expect = 0.21
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 45 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
+ +G +HL+R AP W + + V+ +PS GPH L +P+
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPI 47
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 93.9 bits (223), Expect = 3e-18
Identities = 49/150 (32%), Positives = 81/150 (54%)
Frame = +1
Query: 190 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 369
+ +R+ LK A E +I+ + VDG+V D +P GFMD++ I KT E++R++ D
Sbjct: 47 LVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDK 106
Query: 370 KGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA 549
KGR +++I EE KLCK+ +T + HDG+ + + V D I L +
Sbjct: 107 KGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVP 164
Query: 550 TTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
I + + + G +ITGG++ G +GT+
Sbjct: 165 DHEINEVFELKEGACVLITGGKHTGELGTV 194
Score = 36.7 bits (81), Expect = 0.48
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 63 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
G +KHLK APK W + + +PS G H + L L
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSL 45
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 93.1 bits (221), Expect = 5e-18
Identities = 53/151 (35%), Positives = 77/151 (50%)
Frame = +1
Query: 187 LIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 366
L +R+ LK + E +I+ L+KVDGK + + GFMDV+ I E +R++Y+
Sbjct: 41 LSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYN 98
Query: 367 VKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDI 546
+G + + T E A KL KV+ P N L THDGRT D KV D + +
Sbjct: 99 DQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSV 158
Query: 547 ATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
I + IK + GN IT G ++ + GTI
Sbjct: 159 PDMKISEIIKMQPGNKAYITAGSHVNQTGTI 189
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 88.2 bits (209), Expect = 1e-16
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 10/177 (5%)
Frame = +1
Query: 151 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P P S + P L+ +R+ LKYA E KI++ I +DG R + +PAG MDV+SI
Sbjct: 34 PGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSI 93
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGR----- 489
+ +E + +++D GR ++ + ++ KLCK+ K V G N+ L HDGR
Sbjct: 94 PEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-GNI-QLNLHDGRNQIVK 149
Query: 490 ---TIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
+ + + K DS+ + I I + F G L ITGG+++G IV E
Sbjct: 150 VSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVE 206
Score = 50.4 bits (115), Expect = 4e-05
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +3
Query: 60 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
+GP+KHLKRL AP W L + + RPS GPH + + LPL
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPL 45
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 87.8 bits (208), Expect = 2e-16
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Frame = +1
Query: 151 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P P S A + P + +R+ LKYA T +E I+ + +KVDG VR D +P G MDV+ I
Sbjct: 29 PGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEI 88
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR---TIRY 501
T E++R++ D + + I+ EEA KL +V+ L HDGR T
Sbjct: 89 VPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLE 148
Query: 502 PDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
IK DS+ D+ I I + G ++ G N+G GT+
Sbjct: 149 AGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
Score = 42.3 bits (95), Expect = 0.010
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 75 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLA 188
HL+R AP W + K GGV+ RPS GPH L LPLA
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLA 41
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 87.4 bits (207), Expect = 3e-16
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Frame = +1
Query: 151 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P P + ++ P LI +R+ L YA E KI+ + I VDG VR +P +P G MDVV I
Sbjct: 37 PGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEI 96
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYP 504
+T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 97 PRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIE 156
Query: 505 DP------LIKVNDSIQLDI------ATTXIMDFIKFESGNLCMITGGRNLGRVGTIV 642
DP + V DS+ L++ + ++D I FE G GR+ G VG +V
Sbjct: 157 DPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVV 214
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +3
Query: 63 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPL 185
GPK+H+KRL AP AW + K GG +APRP GPH + +PL
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPL 48
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 87.0 bits (206), Expect = 3e-16
Identities = 51/165 (30%), Positives = 83/165 (50%)
Frame = +1
Query: 148 QPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 327
+P P S A + P + +R+ LK E +I+ + + VDG R D +P G DV++
Sbjct: 27 RPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVIT 86
Query: 328 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 507
+ NE +R++ D KGR ++++ E KLC++ T L +DG I +
Sbjct: 87 LPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSN 145
Query: 508 PLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIV 642
DS+ L I ++ +KFE GNL M+ GG++ G G I+
Sbjct: 146 D-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIM 189
Score = 34.7 bits (76), Expect = 1.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 75 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
H KRL+ PK+W + + G + GPH LPL
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPL 39
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 86.6 bits (205), Expect = 5e-16
Identities = 46/161 (28%), Positives = 77/161 (47%)
Frame = +1
Query: 157 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 336
P S + L ++ A E K+VK + V+GK +P MD +S
Sbjct: 35 PHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPL 94
Query: 337 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 516
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++ I
Sbjct: 95 ANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKI 154
Query: 517 KVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
KV DS+ + I+ +KFE G+LC+IT G++LG + I
Sbjct: 155 KVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVI 195
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 84.2 bits (199), Expect = 2e-15
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 5/163 (3%)
Frame = +1
Query: 169 ASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNEL 348
A A P ++LR + A +EV KI+ QR + V+G+ D G D+VSI K +
Sbjct: 34 AGALPVGVWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGVFDIVSIPKLGKH 93
Query: 349 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 528
+R+ DVKG I E AK +LCK++ T L G + D K D
Sbjct: 94 YRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNTYKAKD 152
Query: 529 SIQLDIATT-----XIMDFIKFESGNLCMITGGRNLGRVGTIV 642
S+ + + T I+D + GN+ MI GG++ G+VG IV
Sbjct: 153 SVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIV 195
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 83.0 bits (196), Expect = 6e-15
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = +1
Query: 151 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P P S+ P + LR+ YA T E I+ + +KVDGKVR D YP G MDV+ +
Sbjct: 28 PGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIEL 87
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI---RY 501
NE +R+I D RI EA K+C+++ L HDGR I +
Sbjct: 88 TPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQD 147
Query: 502 PDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVS 645
+ S+ +++ +MD+ + + G N+GR GT+++
Sbjct: 148 EGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLIN 195
Score = 38.7 bits (86), Expect = 0.12
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 75 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLA 188
HL+R +P+ W +++ G ++ +PS GPH +PLA
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLA 40
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 80.2 bits (189), Expect = 4e-14
Identities = 55/160 (34%), Positives = 78/160 (48%)
Frame = +1
Query: 172 SACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELF 351
S+ P LI LR+ LK E+ +I+ L+ VDGKV + GFMD +++ + L
Sbjct: 36 SSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVSGNDYL- 94
Query: 352 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 531
+ YD KG+ I E KL +VK + HDG T+ IK DS
Sbjct: 95 -VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDS 153
Query: 532 IQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
+ + I I+D +KF GN ITGG ++G + TI S E
Sbjct: 154 VLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIE 193
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 79.8 bits (188), Expect = 5e-14
Identities = 47/153 (30%), Positives = 76/153 (49%)
Frame = +1
Query: 181 PWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI 360
P ++ LR+ LK A +E+ KI+ + + VDGKVR D Y G D +SI N +R++
Sbjct: 40 PLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVV 99
Query: 361 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 540
+ G+F H + +A K+CK+ L HDG T+ + K DS+ L
Sbjct: 100 IGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVIL 156
Query: 541 DIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
+ I + G+L M+T G++ G +G +
Sbjct: 157 KMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 78.6 bits (185), Expect = 1e-13
Identities = 47/164 (28%), Positives = 81/164 (49%)
Frame = +1
Query: 148 QPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 327
+P P + + P + LR+ L E +++ + + VDG R D +P G MD+++
Sbjct: 28 RPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIIT 87
Query: 328 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 507
I N +R++ D K R ++++ A KLC+++ + + + +DG I
Sbjct: 88 IPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNI-IGS 145
Query: 508 PLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
DSI L + ++ IK+E GNL MI GG + G VG+I
Sbjct: 146 NNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
Score = 35.1 bits (77), Expect = 1.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 75 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLA 188
H KR++ PK+W + K + GPH + +PLA
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLA 41
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 77.8 bits (183), Expect = 2e-13
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Frame = +1
Query: 151 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 330
P P S A P ++LR+ L A EV ++ + VDG+ D +P G DV++I
Sbjct: 34 PGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAI 93
Query: 331 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPD 507
+ NE +R++ D +G+ + +I EEA K K +++V+ + Y +T DGRT D
Sbjct: 94 PEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGD 151
Query: 508 PLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
K + + +I I + I E I G++ GR+G I
Sbjct: 152 NSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVI 195
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 69 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLA 188
K+HL+ L P+ W + K G + +PS GPH +P+A
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIA 46
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 74.5 bits (175), Expect = 2e-12
Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Frame = +1
Query: 157 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 336
P + P I L+ LK T E +I+ + VDGKVR D YP G MDVV I
Sbjct: 30 PHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPS 89
Query: 337 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP-DPL 513
+ R+I D T I+ E+AKYK ++ T V L DGR I + L
Sbjct: 90 ADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEEL 149
Query: 514 IKVN----DSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
+ N ++++++ I + G MI GGRN G G I
Sbjct: 150 SQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKI 195
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 73.3 bits (172), Expect = 5e-12
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Frame = +1
Query: 181 PWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI 360
P + LR+ L A E +++ R + VDG++ TD G MDV+++ + + FR I
Sbjct: 40 PLGVILRDVLDLAHNLREAKRMLATRQVLVDGRIETDLGRGVGLMDVLTVGEDS--FRCI 97
Query: 361 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQ 537
DV G+ I+ + A KLC+V +T + HDGR I D L D++
Sbjct: 98 LDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLV 157
Query: 538 LDIATTXIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 651
+ + + F G +TGG ++G +VSR+
Sbjct: 158 ISLPDQSVAGHHPFSKGATAYLTGGSHIGITAKVVSRD 195
Score = 37.5 bits (83), Expect = 0.28
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 75 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 185
H+KRL P++W L + ++ +P+ G H C+PL
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPL 41
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 64.5 bits (150), Expect = 2e-09
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Frame = +1
Query: 172 SACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELF 351
SA P I+LR+ +++AL EV KI+ R + ++G + TD D++S K ++ +
Sbjct: 34 SALPIGIWLRDHMQFALNTKEVRKILHDRQVLLNGHIVTDEHIGIDVFDIISFPKIDKHY 93
Query: 352 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 531
++ D KGR + I+ + AK +L KV T + G + K DS
Sbjct: 94 MILVDEKGRHNEYEISADAAKLQLVKVANKTTIKGGKTQINLTSGANF-IGEENCKGKDS 152
Query: 532 IQLDIA---TTXIMDFIKFESGNLCMITGGRNLGRVGTIV 642
+ + IA + + GN+ +I GG++ + G +V
Sbjct: 153 LVIGIAGDDRFAVQQHFPYAVGNMAIIIGGQHTMKTGKLV 192
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 64.5 bits (150), Expect = 2e-09
Identities = 42/153 (27%), Positives = 68/153 (44%)
Frame = +1
Query: 181 PWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI 360
P + LR+ L T E K + ++VDG RT + G MDVV + T +++R++
Sbjct: 44 PSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMV 103
Query: 361 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 540
+I E K+C+V + + HDGR++ D + V DS +
Sbjct: 104 PSGGAILKPVKIEAAEKDRKICRVTSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLV 162
Query: 541 DIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
+ I+ + E G ++T G N G GTI
Sbjct: 163 QVPGQKILKVARMEKGAHAVVTRGTNAGSTGTI 195
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 62.5 bits (145), Expect = 8e-09
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 1/157 (0%)
Frame = +1
Query: 172 SACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELF 351
S P LI LR+ L YA E + + + ++GK +D P G D+++ + E +
Sbjct: 35 SGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYY 94
Query: 352 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT-IRYPDPLIKVND 528
R+ GR + I P+ A+ KL K+ L HDG T I D D
Sbjct: 95 RVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGD 154
Query: 529 SIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGTI 639
SI + ++ ++E G L G + G VG +
Sbjct: 155 SIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEV 191
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 49.2 bits (112), Expect = 8e-05
Identities = 33/112 (29%), Positives = 54/112 (48%)
Frame = -2
Query: 651 LAGHDGAHTPQVTASRDHTQVPRLKLDEVHNXXSCDV*LDGIVDFDKWVWVADGAAIMRY 472
LA D V + DH Q ++LD + + DV +G+ D + V +GAA+++
Sbjct: 82 LAALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQT 141
Query: 471 QVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN*DNI 316
R+ L QLVL D V ES+L ++D + FI+L + D++
Sbjct: 142 DARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 39.5 bits (88), Expect = 0.068
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 232 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 375
E L I KQ+ +KV+ K + DPT+P D SIE +++ L+ + KG
Sbjct: 126 EELDINKQQKVKVEHKKQLDPTFPRNDFDKFSIEDMDQVLNLLSNYKG 173
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.9 bits (79), Expect = 0.84
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 225 GQSILQTIPQENQ-PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAP 55
G I+ T+ N PG RAT GD + VSV T+R PTS+ W ++ N G P
Sbjct: 79 GGPIVSTLTYGNTIPGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEP 135
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 34.7 bits (76), Expect = 1.9
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 348 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTI 202
Q I+ N +NI + I + N P E LFH F DFVSG ++ I
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGI 98
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.3 bits (75), Expect = 2.6
Identities = 32/103 (31%), Positives = 43/103 (41%)
Frame = -3
Query: 614 RPPVIIHKFPDSNLMKSIXXVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 435
RPP H SN + S A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 434 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 306
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_A7SI31 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1939
Score = 33.9 bits (74), Expect = 3.4
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = -1
Query: 238 GLRFRSKHTSDDSSGKSARGKHSRNLWGPVDGLGAYTPPSLSNIHA 101
GLR + K D+ +G+S RGK + ++ PVDGL PSL N A
Sbjct: 1420 GLRLQLKDRFDNLTGESIRGKVAVSVVSPVDGLDEI--PSLCNASA 1463
>UniRef50_UPI00015BAF49 Cluster: histidinol dehydrogenase; n=1;
Ignicoccus hospitalis KIN4/I|Rep: histidinol
dehydrogenase - Ignicoccus hospitalis KIN4/I
Length = 404
Score = 33.5 bits (73), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 220 KHTSDDSSGKSARGKHSRNLWGPVDGLGAYTPPSL 116
K T+ S S++G + LW PV+ LGAY P L
Sbjct: 98 KQTAPKDSAFSSKGVRAVTLWRPVERLGAYVPGGL 132
>UniRef50_A2DJR1 Cluster: PIKK family atypical protein kinase; n=1;
Trichomonas vaginalis G3|Rep: PIKK family atypical
protein kinase - Trichomonas vaginalis G3
Length = 2247
Score = 33.1 bits (72), Expect = 5.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 184 WLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 363
WLI L+ + ++ + NE LK + + L+ A V+++EK N+L + +Y
Sbjct: 1628 WLIILQQMIVHSNSDNENLKCIIENLLIDCSNKHPHAILQAIISYVLNLEKANKLLKTVY 1687
Query: 364 D 366
D
Sbjct: 1688 D 1688
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,083,774
Number of Sequences: 1657284
Number of extensions: 14276962
Number of successful extensions: 39441
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 38019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39418
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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