Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D15
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 252 4e-68
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 250 1e-67
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 250 1e-67
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.8
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 27 2.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.1
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 7.2
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 25 7.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 9.5
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 9.5
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 252 bits (616), Expect = 4e-68
Identities = 119/185 (64%), Positives = 138/185 (74%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
P H L+ P P P ++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 277 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 456
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 457 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGT 636
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T I FIKF++ M+TGGRN+GRVGT
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Query: 637 IVSRE 651
IV RE
Sbjct: 195 IVHRE 199
Score = 81.0 bits (191), Expect = 1e-16
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 250 bits (613), Expect = 1e-67
Identities = 118/185 (63%), Positives = 138/185 (74%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
P H L+ P P P ++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 277 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 456
KVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 457 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGT 636
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T I FIKF++ M+TGGRN+GRVGT
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Query: 637 IVSRE 651
IV RE
Sbjct: 195 IVHRE 199
Score = 81.0 bits (191), Expect = 1e-16
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 250 bits (612), Expect = 1e-67
Identities = 118/185 (63%), Positives = 138/185 (74%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
P H L+ P P P ++FLRNRLKYAL G EV I+ QRLI+VDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDG 74
Query: 277 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 456
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 457 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGT 636
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T I FIKF++ M+TGGRN+GRVGT
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Query: 637 IVSRE 651
IV RE
Sbjct: 195 IVHRE 199
Score = 81.0 bits (191), Expect = 1e-16
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 250 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 429
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 430 VK-RVATGPKNVPYLVTHDGR 489
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.3
Identities = 27/98 (27%), Positives = 48/98 (48%)
Frame = -2
Query: 363 ID*TKQFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENQP 184
ID +QF+ L+ S+ R + + IN Y LFH+ + G+S+ +T +E
Sbjct: 55 IDSLRQFVQQLSVRQ--NMSKDRREALTYFINSYNDLFHDVY-YGDGRSMSKT--EE--- 106
Query: 183 GASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS 70
A T T T+ + ++ P+ + W+RLS + A+
Sbjct: 107 -AQTIVT----FTIGSYLYKYTHPSELFWQRLSDNMAN 139
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 316 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 492
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 493 IR 498
++
Sbjct: 1778 LK 1779
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 483 WPHHPLPRPTYQSQR 527
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 237 DFVSGQSILQTIPQ-ENQPGASTRATCGDRLTVSVHTHRQVCPTSML 100
D + + I++ P N+P RA G+ S+H + P+S L
Sbjct: 127 DNTTTERIIENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNL 173
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 187 LIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 303
L+ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 411 SLLRGDTVDCESALNIID*TKQ 346
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 486 PHHPLPRPTYQSQRFHPVRHRNYXXY 563
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 232 RFRSKHTSDDSSGKSARGKHSRN 164
R + KH S D S KS +HSR+
Sbjct: 180 RRKLKHESSDRSDKSDSNRHSRH 202
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 489 HHPLPRPTYQSQRFHPVR 542
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,036
Number of Sequences: 5004
Number of extensions: 58145
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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