Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D15
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 247 5e-66
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035) 34 0.12
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 31 1.1
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 4.3
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 28 5.7
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_7597| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36195| Best HMM Match : Pentaxin (HMM E-Value=1.9) 28 7.6
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 247 bits (605), Expect = 5e-66
Identities = 116/185 (62%), Positives = 138/185 (74%)
Frame = +1
Query: 97 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 276
PKH L+ P P +IFLRNRLKYAL G EV KIVKQRLIK+DG
Sbjct: 439 PKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDG 498
Query: 277 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 456
KVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G K
Sbjct: 499 KVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAK 558
Query: 457 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIMDFIKFESGNLCMITGGRNLGRVGT 636
VPY+VTHD RTIRYPDP IKVND++ +DI T ++D+IKF++GN+ M+ GGRN+GRVG
Sbjct: 559 GVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGM 618
Query: 637 IVSRE 651
+ RE
Sbjct: 619 VTHRE 623
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +3
Query: 54 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 194
MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL F
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIF 471
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/70 (21%), Positives = 33/70 (47%)
Frame = +1
Query: 169 ASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNEL 348
A+A PW +Y L ++ + + L++ G + P+YP+ ++ ++ +N+L
Sbjct: 582 AAASPWSQDFGTSSEYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQL 641
Query: 349 FRLIYDVKGR 378
F + R
Sbjct: 642 FNTFIESSTR 651
>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
Length = 582
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = -1
Query: 238 GLRFRSKHTSDDSSGKSARGKHSRNLWGPVDGLGAYTPPSLSNIHA 101
GLR + K D+ +G+S RGK + ++ PVDGL PSL N A
Sbjct: 93 GLRLQLKDRFDNLTGESIRGKVAVSVVSPVDGLDEI--PSLCNASA 136
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +1
Query: 385 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTXIM 564
I +TP+ K C+V R++TGP +++ +G + +++ ++ + + +
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345
Query: 565 DFIKFESGNLCM 600
F FE G CM
Sbjct: 346 -FPDFEKGVACM 356
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +3
Query: 198 EES--SEVCFDRKRSPENCE 251
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 201 PQENQPGA-STRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCW 49
P + PGA +T AT D+ + + QV T+ WE S + GLA W
Sbjct: 73 PSASYPGADTTMATPWDKHSSAPAEFHQVSNTNTPWEDQSTAPVESGLAAPW 124
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 403 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTXIMDFI 573
E+A +C++ R+ P+ LV G +++ I + Q+ + + +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030
Query: 574 KFESGNLCMITGGRNLGRV 630
K + NLC G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049
>SB_7597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 201 PQENQPGA-STRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCW 49
P + PGA +T AT D+ + + QV T+ WE S + GLA W
Sbjct: 68 PSASYPGADTTMATPWDKHSSAPAEFHQVSNTNTPWEDQSTAPVESGLAAPW 119
>SB_36195| Best HMM Match : Pentaxin (HMM E-Value=1.9)
Length = 192
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 153 GPHKLRECLPLADFPEESSEV-CFDRKRSPE 242
GP KLR P DFP S++ +DR SPE
Sbjct: 51 GPRKLRLLRPYPDFPGAISDLNVWDRVLSPE 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,408,815
Number of Sequences: 59808
Number of extensions: 458679
Number of successful extensions: 1152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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