Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D14
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 73 2e-13
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 73 3e-13
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 7e-11
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 7e-11
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 63 2e-10
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 62 4e-10
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 60 2e-09
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 45 5e-05
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 32 0.36
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 31 0.62
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06) 28 5.8
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 5.8
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08) 28 7.7
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 7.7
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 28 7.7
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = +2
Query: 284 LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRY 460
L ++ + + DK ++ LDV+++ PEEIS+K G I + GKH+ + EHGY + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSY 87
Query: 461 ALPEGAAPXTVESRLSSDGVLTITAPRKVP 550
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.5 bits (58), Expect(2) = 0.18
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 263 LAAASRDLGSSIKADKDKFQVNLDVQHFSPE 355
+ A++ G K D +F V LDV FSP+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 24.6 bits (51), Expect(2) = 0.18
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 452 RRYALPEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
R + LP+ ++ SRL DG L I A +++ ER+V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEA-KRILHPTPHERQVNI 203
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +2
Query: 305 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGAA 481
D DKFQ+ LDV+ F PEEI+ K +G I V G + + E G+ S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVD 60
Query: 482 PXTVESRLSSDGVLTITAPRKVPDAVKGERKVP 580
++ +R++ DG+L + A +K P A E K P
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 305 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYIS-RQFVRRYALPEGAA 481
D KF + LDV F PEE+ VK + V + E +EHG+ + RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVD 153
Query: 482 PXTVESRLSSDGVLTITAPRK 544
T+ RL DGVL I A ++
Sbjct: 154 MDTLVPRLGKDGVLYIEADKR 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +2
Query: 302 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGA 478
A+++K ++ LDV+ + PEEIS K +G++ V G+H + G+ ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVN-EGPFGFELKEFRRTFALPEGV 60
Query: 479 APXTVESRLSSDGVLTITAPRKVPDAVKGERK 574
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +2
Query: 281 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRY 460
D G DKF + +DV F P+ I V+ ++V HE + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 461 ALPEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
LP ++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 64.5 bits (150), Expect = 7e-11
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +2
Query: 302 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGA 478
A+++K ++ LDV+ + PEEIS K +G++ V G+H + G+ ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVN-EGPFGFELKEFRRTFALPEGV 60
Query: 479 APXTVESRLSSDGVLTITAPRKVPDAVKGERK 574
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +2
Query: 281 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRY 460
D G DKF + +DV F P+ I V+ ++V HE + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 461 ALPEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
LP ++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +2
Query: 302 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGA 478
A+++K ++ LDV+ + PEEIS K +G++ V G+H + G+ ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVN-EGPFGFELKEFRRTFTLPEGV 60
Query: 479 APXTVESRLSSDGVLTITAPRKVPDAVKGERK 574
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +2
Query: 311 DKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGAAPX 487
D+ ++ LDV+ + PEEIS K +G++ V G+H + G+ ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVN-EGPFGFELKEFRRTFTLPEGVEAS 297
Query: 488 TVESRLSSDGVLTITAPRKVPDAVKGERK 574
V++R+S+ G L I A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +2
Query: 281 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRY 460
D G DKF + +DV F P+ I V+ ++V HE + H Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 379
Query: 461 ALPEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
LP ++ +RL +G L A ++ A+ R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +2
Query: 281 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRY 460
D G DKF + +DV F P+ I V+ ++V HE + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 461 ALPEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
LP ++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +2
Query: 302 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGA 478
A+++K ++ LDV+ + PEEIS K +G++ V G+H + G+ ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVN-EGPFGFELKEFRRTFTLPEGV 60
Query: 479 APXTVESRLSSDGVLTITAPRKVPDAVKGERK 574
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +2
Query: 281 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRY 460
D G DKF + +DV F P+ I V+ ++V HE + H Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQF 145
Query: 461 ALPEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
LP ++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGA 478
A K+ ++ LDV+ + PEEIS K +G + V G+H + E G+ ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVN-EGEFGFELKEFRRTFTLPEGI 60
Query: 479 APXTVESRLSSDGVLTITAPRKVP 550
P V SR+S+ G L I A + +P
Sbjct: 61 DPENVTSRISNHGHLHIEARKALP 84
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/95 (30%), Positives = 48/95 (50%)
Frame = +2
Query: 299 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGA 478
KA +DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREV 150
Query: 479 APXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
++ +RL +G L A + V A+ R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +2
Query: 305 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGAA 481
+++K ++ LDV+ + PEEIS K +G + V G+H + G+ ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVN-EGPFGFELKEFRRTFTLPEGVE 62
Query: 482 PXTVESRLSSDGVLTITAPRKV--PDAVKGERK 574
V++R+S+ G L I A + + PD K E K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKKESK 95
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/99 (27%), Positives = 50/99 (50%)
Frame = +2
Query: 287 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYAL 466
G+ ++ DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 467 PEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVPI 583
P ++ +RL +G L A ++ A+ R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 272 ASRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYI-SRQF 448
A+++ S+ D KF + LDV F PEE+ VK + V + E +EHG+ +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQF 70
Query: 449 VRRYALPE 472
R + LP+
Sbjct: 71 NRHFVLPQ 78
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/80 (21%), Positives = 43/80 (53%)
Frame = +2
Query: 305 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGAAP 484
DK+ ++ ++V+ F+ +++S++ +++ G+ + KD+ RQF R P+
Sbjct: 96 DKNGIKLEMNVRGFAAKDVSLQVDGQDLIIKGEKMD-KDDGWCKMRQFCWRRRFPKSTDM 154
Query: 485 XTVESRLSSDGVLTITAPRK 544
++++ L +L I A ++
Sbjct: 155 KSIKATLKYGDILEIEAQKE 174
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 219 PVQCSPKTTSDRGDNSRLHLVTSAP---A*RPTRTSSKSIWTCSTS 347
P+ P++ R D R L S P A T T S S+WTCS S
Sbjct: 273 PLDLKPRSNVMRVDEGRYELKLSCPFHCAFSHTLTDSHSLWTCSNS 318
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 277 RCSRELSPRSEVVFGEHWTGDGSQHVVRG*RQP 179
R SR SP + FG TGDG QH+V+ +P
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVKERARP 132
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 522 SPSPRRGRY---PTPSRERERCPSHXPVP 599
SP PRR R P+P R R R PS+ P P
Sbjct: 916 SPPPRRRRKSPSPSPPRRRRRSPSNSPPP 944
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 519 FSPSPRRGRYPTPS---RERERCPSHXPVPFARRSXTXAREP 635
+SPS RR PTPS R R + PS P RRS + + P
Sbjct: 903 YSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPP 944
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +3
Query: 522 SPSPRRGRYP--TPSRERERCPSHXPVPFARRSXTXAREP 635
SP PRR R +PSR R P+ P P RR P
Sbjct: 892 SPPPRRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPP 931
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 326 NLDVQHFSPEEI--SVKTADGYIVVXGKHEEXKDEHGYISRQFVRRYALPEGAAPXT-VE 496
++DV S E+I ++ ADG I H DE+G I F++ + E A T V+
Sbjct: 94 DVDVSSISGEDILRAIDAADGDISGESGHVTDSDENGDIDSSFIKLESSSESAPLATKVQ 153
Query: 497 SRLSSD 514
+ L+++
Sbjct: 154 ATLATN 159
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 527 ITAPRKVPDAVKGERKVPIAXTG 595
+T+ RKVP+ V +RKVP TG
Sbjct: 42 VTSQRKVPNMVTSQRKVPNMVTG 64
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 524 TITAPRKVPDAVKGERKVPIAXT 592
T+T+ RKVP+ V RKVP T
Sbjct: 91 TVTSQRKVPNMVSSRRKVPNTVT 113
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 527 ITAPRKVPDAVKGERKVP 580
+T+ RKVP+ V G RKVP
Sbjct: 52 VTSQRKVPNMVTGRRKVP 69
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 434 ISRQFVRRYALPEGAAPXTVESRLSSDGVLTITAPRKVPDAVKGERKVP 580
ISR+ V + P TV S+ + +++ RKVP+ V RKVP
Sbjct: 73 ISRRKVPNMVSSQRKVPNTVTSQRKVPNM--VSSRRKVPNTVTSRRKVP 119
>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
Length = 353
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -2
Query: 301 LYAGAEVTRCSRELSPRSEVVFGE----HWTGDGSQH 203
LY+ V + +RE+ R ++ F E HWTG G H
Sbjct: 83 LYSSGNVNQAAREMGKR-DIDFMEISETHWTGQGKMH 118
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 490 CGIAAVIRRGSHHHRAEE 543
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
Length = 1158
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 570 LSPLTASGTFLGAVMVRTPSDDSRDSTVSGAAPSGSA*RRTNCLE 436
L+ +A+ + + ++R +RDS+VS +AP R T CL+
Sbjct: 415 LAVASANHWYRSSAIIRWMRSRTRDSSVSSSAPYHGVSRYTTCLK 459
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 436 FKAVRPTLRAA*RRGA*XCGIAAVIRRGSHHHRAEEGTRRRQGREKGAHRTXRXRSQ 606
F VRP R R G IRR R + R+R+ R + R R RSQ
Sbjct: 657 FVTVRPVTRKRQRLRRRLTGWRRRIRRQRRRKRRRKRRRQRRSRRRRRRRRRRRRSQ 713
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 401 KHEEXKDEHGYISRQFVRRYAL 466
KHEE +D HGY+ + ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,904,712
Number of Sequences: 59808
Number of extensions: 417734
Number of successful extensions: 1342
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -