Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D11
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    57   3e-09

>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 30/92 (32%), Positives = 44/92 (47%)
 Frame = +1

Query: 313 ANQDFNTHAPADFGFAGGFPSPMTSPAQISSMLQQPVVXDMAIQYGNQLAAQGKEAVQRE 492
           +N   NT      GF+G    P    A  S+ L       M  Q G      G+E V++ 
Sbjct: 17  SNMRVNTRYEPTAGFSGT-SVPSVQAANPSAYLPNSATAQMGFQLGKNAVNAGQEYVEQN 75

Query: 493 LHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPY 588
             K++  +RL +YF V   YV+ KL+LI+FP+
Sbjct: 76  FGKWLSTTRLHHYFTVTNSYVVAKLLLIIFPW 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,826
Number of Sequences: 5004
Number of extensions: 53399
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)