Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D11
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349... 41 7e-04
04_01_0336 - 4414227-4414608,4414690-4414841,4414931-4415029,441... 41 7e-04
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 33 0.20
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 30 1.9
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 30 1.9
04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826... 29 3.2
12_01_0812 - 7460448-7460507,7460595-7460672,7460772-7460981,746... 28 7.5
08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150 27 9.9
>06_03_0781 -
24533949-24534330,24534666-24534817,24534901-24534999,
24535127-24535302,24535983-24536292
Length = 372
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +1
Query: 346 DFGFAGGFPSP-MTSPAQISSMLQQPVVXDMAI-QYGNQLAAQGKEAVQRELHKFVPVSR 519
D G GG P+ +P + + P + + YG + E +Q + +++ S
Sbjct: 112 DLGGLGGRPATSQANPFESALYGAGPGLIRSGLGAYGEKFLGSSSEFMQSNITQYL--SN 169
Query: 520 LRYYFAVDTRYVIRKLMLIVFPYTHXG 600
+YYF V+++YV KL +I+FP+ H G
Sbjct: 170 PQYYFQVNSQYVRNKLKVILFPFLHRG 196
>04_01_0336 -
4414227-4414608,4414690-4414841,4414931-4415029,
4415131-4415340
Length = 280
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +1
Query: 358 AGGFPSPMTSPAQISSML---QQPVVXDMAIQYGNQLAAQGKEAVQRELHKFVPVSRLRY 528
AG PS P Q + ++ YG + E +Q ++++ S +Y
Sbjct: 23 AGQMPSANPQPGQFGNPFYGASSGLIKTGLGAYGEKFLGSSSEFMQSNINRYF--SNPQY 80
Query: 529 YFAVDTRYVIRKLMLIVFPYTHXG 600
YF V+ +YV KL +I+FP+ H G
Sbjct: 81 YFHVNDQYVRNKLKVILFPFLHRG 104
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -1
Query: 419 GCCSIELICAGEVIGEGNPPANPKSAGACVLKS*LASNWKLSW 291
GCC IC+ EV+ + +P NP+S+ V + ++++LSW
Sbjct: 179 GCCGNHGICSHEVLQDESPGPNPRSSHKLVSRK---ASFRLSW 218
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 537 RKIVPQPRDWHKLVQFSLHSLLALSRELVA 448
R +V PR +HK+ LH LL ++R L+A
Sbjct: 115 RMVVQMPRVFHKVCLPKLHQLLVIARRLLA 144
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 337 APADFGFAGGFPSPMTSPAQISSMLQQPVVXDMAIQYGNQLAAQG 471
+P +G +GGF +P P ++ + Q P QYGNQ G
Sbjct: 453 SPMQYGASGGFSAPAAPPQELHTSQQMP-----PPQYGNQPGPAG 492
>04_01_0628 -
8266494-8266501,8266578-8266875,8268055-8268313,
8268892-8269052,8269553-8269884,8270947-8271265,
8271335-8271420,8271600-8271684
Length = 515
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 387 PGANKLYAATTCSPXHGYSIRQPARGSRQGGCATRIAQVCASLEAAVLFCGRYKIC 554
PGA + S +G Q A ++ G R+A LEA V +C R++ C
Sbjct: 387 PGAMDSAVSKHLSHAYGTLATQVASIAQNEGLGKRLAHGYPFLEAEVAYCARHEYC 442
>12_01_0812 -
7460448-7460507,7460595-7460672,7460772-7460981,
7461095-7461142,7461270-7461455,7461653-7461656,
7461766-7461893
Length = 237
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 496 HKFVPVSRLRYYFAVDTRYVIRKLML 573
HK + +S R++F +D Y++RK ++
Sbjct: 68 HKKIVISETRFFFYLDRYYILRKSLV 93
>08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150
Length = 276
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 370 PSPMTSPAQISSMLQQPVVXDMAIQYGNQLAAQGKEAVQ 486
P+P +PA + +Q P AIQ QL Q KE +Q
Sbjct: 69 PAPQVAPAYPVNPMQLPEHQQHAIQQVQQLQQQQKEQLQ 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,033
Number of Sequences: 37544
Number of extensions: 370568
Number of successful extensions: 977
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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