Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D11
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)                  57   1e-08
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   30   1.4  
SB_35811| Best HMM Match : Orthopox_C10L (HMM E-Value=5.1)             30   1.4  
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08)                   28   5.8  

>SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)
          Length = 227

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 22/76 (28%)
 Frame = +1

Query: 433 MAIQYGNQLAAQGKEAVQRE----------------------LHKFVPVSRLRYYFAVDT 546
           MA QYG  +A+QGKE V++                       L +FV +S+L+YYFAVDT
Sbjct: 1   MAFQYGTNVASQGKEYVEKNVIVFSFSNSVEMYLRYSNKWLTLDRFVSISKLKYYFAVDT 60

Query: 547 RYVIRKLMLIVFPYTH 594
            YV++KL L++FP+TH
Sbjct: 61  SYVVKKLGLLLFPFTH 76



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 584 PILIXEWMVKYDQDTPVQPRYDI 652
           P     W V+Y+++ PV PRY++
Sbjct: 73  PFTHKNWAVQYNKEEPVAPRYEV 95


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -3

Query: 213 THGSYITYSFCFTDGT 166
           T GSY+TYSF F DGT
Sbjct: 807 TDGSYVTYSFYFGDGT 822


>SB_35811| Best HMM Match : Orthopox_C10L (HMM E-Value=5.1)
          Length = 178

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 399 YLRRGSHWRRKSPSKSKICRSMCIKILIGI*LEAFL 292
           + RR  +W   SPS   ICR+MC+   I + LE  +
Sbjct: 27  FCRRTVNWSAVSPSVGAICRNMCLLREIIVSLEVII 62


>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 549 SCIDRKIVPQPRDWHKLVQFSLHSLLALSRELVAVLNSHVXDYRLLQHRAYLRRGSHWRR 370
           + + R   P+  DW+ +V FSL  L+ +   +V V++ +  D R  +    L  G+  +R
Sbjct: 214 AAMPRVSYPKALDWYLMVSFSLVFLVLIECMIVFVISKYKNDRRKRRISKILNSGNSTKR 273


>SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08)
          Length = 677

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +1

Query: 358 AGGFPSPMTSPAQISSMLQQPVVXDMAIQYGNQLAAQGKEAVQREL 495
           AGG P P+  P+   SM++Q  + + AI+   + AA+ ++ +Q +L
Sbjct: 178 AGGAPVPVMGPSAPPSMMEQQRLMNDAIEKARK-AAELQKKIQEQL 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,767,515
Number of Sequences: 59808
Number of extensions: 433555
Number of successful extensions: 1014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)