Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D11
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30890.1 68414.m03779 integral membrane HRF1 family protein c...    41   8e-04
At3g59500.1 68416.m06640 integral membrane HRF1 family protein c...    38   0.004
At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put...    31   0.67 
At4g33945.1 68417.m04817 armadillo/beta-catenin repeat family pr...    29   2.7  
At3g45430.1 68416.m04904 lectin protein kinase family protein co...    27   8.2  

>At1g30890.1 68414.m03779 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +1

Query: 445 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHXG 600
           YG ++     E VQ  + ++   S  +YYF V+ +YV  KL +++FP+ H G
Sbjct: 42  YGERILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRG 91


>At3g59500.1 68416.m06640 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 445 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHXG 600
           YG ++     E VQ  + ++   S  +YYF V+ +YV  KL +++ P+ H G
Sbjct: 42  YGEKIFGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKIVLLPFLHRG 91


>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
           putative similar to glycerol-3-phosphate dehydrogenase
           GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
           [GI:1020315], Rattus norvegicus [SP|P35571]; contains
           Pfam profile PF01266 FAD dependent oxidoreductase
          Length = 629

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 387 PGANKLYAATTCSPXHGYSIRQPARGSRQGGCATRIAQVCASLEAAVLFCGRYKIC 554
           PGA    AA   S  +G    + A  +++ G   R+A     LEA V +C R++ C
Sbjct: 503 PGAMDTAAAKHLSHAYGSMADRVATIAQEEGLGKRLAHGHPFLEAEVAYCARHEYC 558


>At4g33945.1 68417.m04817 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 464

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 449 ATSSRLKARRLCNENCTSLCQSRGCGTILRSIQD 550
           + S+ LKA  + +E C S+ +S G  T+LR I D
Sbjct: 276 SASTALKAIAVNDEICKSIAESGGIDTLLRCIDD 309


>At3g45430.1 68416.m04904 lectin protein kinase family protein
           contains Pfam domains PF00138: Legume lectins alpha
           domain and PF00069: Protein kinase domain
          Length = 613

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 528 VPQPRDWHKLVQFSLHSLLALSRELVAVLNSHVXDYRLLQHRAYLRRGSHWRRK 367
           VP+PR  HK VQF+L  ++AL   L  V+ + +      + + Y      W +K
Sbjct: 214 VPRPRAEHKKVQFAL--IIALPVILAIVVMAVLAGVYYHRKKKYAEVSEPWEKK 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,942
Number of Sequences: 28952
Number of extensions: 287959
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)