Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D10
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 85 5e-17
At3g05540.1 68416.m00607 translationally controlled tumor family... 79 2e-15
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR... 34 0.072
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 28 4.7
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 28 4.7
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 28 6.2
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 28 6.2
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 28 6.2
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 27 8.2
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 27 8.2
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 27 8.2
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 84.6 bits (200), Expect = 5e-17
Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Frame = +2
Query: 182 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK 355
W D+ I G NPSAEE DEG D + + VDIV RL E + DKK + Y+K
Sbjct: 35 WVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIK 92
Query: 356 DYMKKLVXKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRD 535
Y+K L KL E+ DQ VFK + K +L R + QFF GE M D + Y+
Sbjct: 93 KYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK- 148
Query: 536 FDGTQIPIMMFFKHGLXXEK 595
+G+ P ++F HGL K
Sbjct: 149 -EGSTNPTFLYFAHGLKEVK 167
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +1
Query: 82 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVT 189
M +Y+D++TGDE+ SD++ K ++ +++EV G+ VT
Sbjct: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVT 37
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 79.4 bits (187), Expect = 2e-15
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Frame = +2
Query: 209 QIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXK 382
++EG NPS EE DEG D VDI+ RL E +F DKK + +++K Y+K+L K
Sbjct: 30 EVEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPK 88
Query: 383 LEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDC-DGMVAMMEYRDFDGTQIPI 559
L+ + E+FK ++ K ++ + K+ QFF GESM+ +G + YR +G P
Sbjct: 89 LDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR--EGATDPT 143
Query: 560 MMFFKHGL 583
++ +GL
Sbjct: 144 FLYLAYGL 151
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 82 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQG 201
M +Y+DI+TGDE+ SD++ K ++ +++EV G+ + +G
Sbjct: 1 MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEG 41
>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1355
Score = 34.3 bits (75), Expect = 0.072
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = +2
Query: 251 GTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK-------DYMKKLVXKLEEKAPDQV 409
G D +SG++ + + + Y G+ + +LY + D M+ + KL P +
Sbjct: 184 GIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEMLSHMKSDKMEVKLLKLNHPPPQIM 243
Query: 410 EVFKTNMNKVMKDILGRFKELQ-FFTGESMD 499
EVFK+N N + ++ F ++ FF GE D
Sbjct: 244 EVFKSNYNALNENEKSMFLDIACFFRGEKAD 274
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 215 EGFNPSAEEADEGTDSAVESG 277
EGF P+AEEAD+G S + G
Sbjct: 272 EGFLPTAEEADDGIGSMMMGG 292
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 316 VCFD*PVVQDYVNSALDGRVRALVSLFSRRIKTLDLDISPVLSS 185
V F P+V ++AL+ +R L LF + T+DL + V SS
Sbjct: 369 VAFPIPIVLPMQSTALEAEIRHLHRLFGSLLTTMDLCMCRVESS 412
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Frame = +2
Query: 203 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXK 382
D+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTYG 163
Query: 383 L------EEKAPDQVEVFKTNMN 433
+ E+ PD E+ K M+
Sbjct: 164 VYSDPADPEELPDYYEIIKNPMD 186
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Frame = +2
Query: 203 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXK 382
D+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTYG 163
Query: 383 L------EEKAPDQVEVFKTNMN 433
+ E+ PD E+ K M+
Sbjct: 164 VYSDPADPEELPDYYEIIKNPMD 186
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 192 SRHQPTGHFVNNFIDQFHFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 37
SRHQP+ V D E T+ + + +LHFDG N N N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 428 MNKVMKDILGRFKELQFFTGE---SMDCDGM 511
+NK++KDI+ R+K LQ + + DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 221 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 367
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 546 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 596
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 221 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 367
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 558 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 608
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,390
Number of Sequences: 28952
Number of extensions: 239307
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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