Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D08
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.9  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   5.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 307 GSFH*IQV*CRSTYGTCWPECC*CHCQGL 393
           G +  +   C +   TCW EC    C+ L
Sbjct: 869 GEYKCVTCKCENGKPTCWRECDKATCEKL 897


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 364 ECC*CHCQGLPTLNSLISSYSVRAXK*WRG 453
           EC    CQ   T   LI SYS +  K ++G
Sbjct: 187 ECDSAPCQNGGTCLDLIGSYSCKCPKGFQG 216


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 397 WEDLGNGTSNTQASKFHKLID 335
           WE L   T  ++ SK  +L+D
Sbjct: 105 WESLIEVTKTSETSKLQQLVD 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,324
Number of Sequences: 336
Number of extensions: 3525
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)