Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D08
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...   121   8e-29
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    26   5.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.2  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   9.5  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   9.5  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   9.5  

>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score =  121 bits (292), Expect = 8e-29
 Identities = 59/127 (46%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
 Frame = +2

Query: 275 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPXNNGGD 454
           L+ S A ALD +L +   FS+DQLMELAGLSV+ A+ + +PPS +S  LI CGP NNGGD
Sbjct: 6   LSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65

Query: 455 GLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDK--LPHTKDLNNEYKV 628
           GLVAARH+  +GY  +V+YPK +   LY+ L +Q    ++ ++      H   L  + K+
Sbjct: 66  GLVAARHLWQYGYKPTVYYPKPSSPELYKRLCKQLDDLDIPVVKSHDSNHFSQLLRDSKL 125

Query: 629 LVDALFG 649
           +VD++FG
Sbjct: 126 VVDSIFG 132


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 219  YSFATRNIKALPNNLYNNIYRRF 151
            YSF+T +I++  N++Y  + +RF
Sbjct: 1643 YSFSTIDIQSFENSIYREVLQRF 1665


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 136 DRYFGSKCQFYLIKSYVRVTYVL 68
           D+YFG+ C+  LI ++ +  YV+
Sbjct: 93  DKYFGNVCELDLIFNFEKAYYVM 115


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 486 SDTMYRYIILNAHPNLCMKTFWNNA*D 566
           S + +R ++LN HP+  +K   NNA D
Sbjct: 467 SSSAFRLLLLNMHPHDELKQLINNAVD 493


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 548 LEQCIRFNVNIIDKLPHTKDLNNEYKVLV 634
           +E CI+F  N+ID   H K+ N +   L+
Sbjct: 111 IEDCIQFMANLIDN--HVKNCNKKKITLI 137


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +2

Query: 236 TSSVNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLME-LAG----LSVASAIAKVFPP 400
           T SV +C  + ++LN   +   D+ LF   K   + +++ L G    LSV S +AK+ PP
Sbjct: 321 TKSVEEC--ILKFLNLPSS---DKALFKMDKVHTNPVVDSLQGKNPILSVVSFLAKMVPP 375

Query: 401 ST 406
           S+
Sbjct: 376 SS 377


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 228 PMLYSFATRNIKALPNNLYNNI 163
           P+L S AT NI+  P++ YNNI
Sbjct: 97  PILNS-ATSNIRLTPSDTYNNI 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,994
Number of Sequences: 5004
Number of extensions: 55273
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)