Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D08
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 139 2e-33
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 28 5.6
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 28 5.6
03_01_0293 - 2258647-2258754,2258861-2259085 28 5.6
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 28 5.6
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 27 9.9
03_05_0957 + 29195549-29196706,29198590-29198868 27 9.9
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 139 bits (337), Expect = 2e-33
Identities = 66/139 (47%), Positives = 90/139 (64%)
Frame = +2
Query: 233 MTSSVNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS 412
+++S + +L Q EAA +D+ L FSVDQLMELAGLSVA+A+A+V+ H+
Sbjct: 6 VSASASASGEEVTHLAQREAAEIDEQLMGPLGFSVDQLMELAGLSVAAAVAEVYKLGEHT 65
Query: 413 SALIVCGPXNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKL 592
L++CGP NNGGDGLVAARH+ FGY SV YPKRTPKPLY L Q + +
Sbjct: 66 RVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKPLYSGLCTQLESLTIPFVPVE 125
Query: 593 PHTKDLNNEYKVLVDALFG 649
+L+ E+ +++DA+FG
Sbjct: 126 DLPANLSEEFDIIIDAMFG 144
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 275 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPS-THSSALIVCGPXNNGG 451
L +E D + + ++++ Q + A+A+A FP S T + L +C P ++GG
Sbjct: 322 LRDAERIVYDDNGCSYKQYTISQYFTTSA-GEAAAMATAFPYSFTRTKHLTLCPPSSHGG 380
Query: 452 D 454
D
Sbjct: 381 D 381
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 136 DRYFGSKCQFYLIKSYVRVTYVL 68
DRYFGS C+ LI ++ + Y+L
Sbjct: 203 DRYFGSVCELDLIFNFHKAYYIL 225
>03_01_0293 - 2258647-2258754,2258861-2259085
Length = 110
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 470 RHMQLFGYNVSVHYP 514
RH QLFGY SVH P
Sbjct: 25 RHFQLFGYVASVHMP 39
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 28.3 bits (60), Expect = 5.6
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Frame = +2
Query: 245 VNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALI 424
V C+++ R + +S ++ D T YK + + + +S V PP L
Sbjct: 418 VEICDSLFRLIERSISSVYDIIFQTHYKMPRNPVYMMDTSPSSSQSFSVDPPKEFFQMLS 477
Query: 425 VCGPXNNGGDGLVAARHMQLFGYNVSVHYPKRT-----PKPLYENLLEQCIRFNVNIIDK 589
CGP + L L Y++S RT P E L C+ ++ +I
Sbjct: 478 ACGPYLHRNTQLFQKVCRVLKAYHLSAKESIRTAGVMSPDSRIEEALGSCLLPSLQLIPA 537
Query: 590 LP 595
P
Sbjct: 538 NP 539
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 400 GWE-DLGNGTSNTQASKFHKLIDTKLVFSE 314
GWE D G+ NT AS+F + ID FSE
Sbjct: 344 GWEVDQGSYFPNTFASRFDEGIDASFDFSE 373
>03_05_0957 + 29195549-29196706,29198590-29198868
Length = 478
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 524 PKPLYENLLEQCIRFNVNIIDKLPH 598
P P + LL+QC+ F+ +D PH
Sbjct: 433 PVPDAQELLQQCLGFSTRNVDDCPH 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,346
Number of Sequences: 37544
Number of extensions: 342553
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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