Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D08
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   6.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   6.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   6.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.9  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 569 NVNIIDKLPHTKDLNNEYKVLVD 637
           N+N+ + L   + LNN +K L+D
Sbjct: 31  NINVDEILHSDRLLNNYFKCLMD 53


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 569 NVNIIDKLPHTKDLNNEYKVLVD 637
           N+N+ + L   + LNN +K L+D
Sbjct: 31  NINVDEILHSDRLLNNYFKCLMD 53


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 569 NVNIIDKLPHTKDLNNEYKVLVD 637
           N+N+ + L   + LNN +K L+D
Sbjct: 31  NINVDEILHSDRLLNNYFKCLMD 53


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 239 SSVNQCNTVTRYLNQ 283
           S VN   T+T YLNQ
Sbjct: 76  SEVNMDYTITMYLNQ 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,945
Number of Sequences: 438
Number of extensions: 4789
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)