Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D08
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-relat... 138 3e-33
At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-relat... 138 3e-33
At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM do... 35 0.041
At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,... 29 2.0
At3g26125.1 68416.m03258 cytochrome P450, putative 29 2.7
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 29 2.7
At1g13150.1 68414.m01525 cytochrome P450, putative strong simila... 29 3.6
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 28 4.7
At2g36360.1 68415.m04462 kelch repeat-containing protein low sim... 28 4.7
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 28 4.7
At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein si... 28 6.2
At1g13140.1 68414.m01523 cytochrome P450 family protein similar ... 28 6.2
At5g64810.1 68418.m08150 WRKY family transcription factor contai... 27 8.2
>At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-related
contains weak similarity to Pyridoxamine 5'-phosphate
oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
(Swiss-Prot:P28225) [Shigella flexneri]
Length = 466
Score = 138 bits (334), Expect = 3e-33
Identities = 66/126 (52%), Positives = 85/126 (67%)
Frame = +2
Query: 272 YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPXNNGG 451
YL Q EAA +D+ L FS+DQLMELAGLSVA++IA+V+ P +S L +CGP NNGG
Sbjct: 75 YLTQREAAEIDETLMGPLGFSIDQLMELAGLSVAASIAEVYKPEEYSRVLAICGPGNNGG 134
Query: 452 DGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPHTKDLNNEYKVL 631
DGLVAARH+ FGY + YPKRT KPLY L+ Q +V + DL+ ++ V+
Sbjct: 135 DGLVAARHLHHFGYKPFICYPKRTAKPLYTGLVTQLDSLSVPFVSVEDLPDDLSKDFDVI 194
Query: 632 VDALFG 649
VDA+FG
Sbjct: 195 VDAMFG 200
>At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-related
contains weak similarity to Pyridoxamine 5'-phosphate
oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
(Swiss-Prot:P28225) [Shigella flexneri]
Length = 530
Score = 138 bits (334), Expect = 3e-33
Identities = 66/126 (52%), Positives = 85/126 (67%)
Frame = +2
Query: 272 YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPXNNGG 451
YL Q EAA +D+ L FS+DQLMELAGLSVA++IA+V+ P +S L +CGP NNGG
Sbjct: 75 YLTQREAAEIDETLMGPLGFSIDQLMELAGLSVAASIAEVYKPEEYSRVLAICGPGNNGG 134
Query: 452 DGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPHTKDLNNEYKVL 631
DGLVAARH+ FGY + YPKRT KPLY L+ Q +V + DL+ ++ V+
Sbjct: 135 DGLVAARHLHHFGYKPFICYPKRTAKPLYTGLVTQLDSLSVPFVSVEDLPDDLSKDFDVI 194
Query: 632 VDALFG 649
VDA+FG
Sbjct: 195 VDAMFG 200
>At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 789
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 368 VASAIAKVFPPSTHSSALIVCGPXNNGGDGLVAARHMQLFGYNVSVHYPKRTP 526
+A AI FP + S++I+ G G GL AAR + FG+ V+V ++ P
Sbjct: 170 IAQAIKDKFPAQSSKSSVIIVGA---GLSGLAAARQLMRFGFKVTVLEGRKRP 219
>At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase [Lycopersicon
esculentum] GI:7939619, beta-galactosidase BG1
GI:15081596 from [Vitis vinifera]; contains Pfam profile
PF01301: Glycosyl hydrolases family 35
Length = 732
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +2
Query: 413 SALIVCGPXNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIID 586
S++I C +V H ++ + S+HYP+ TP+ ++E+L+++ +++ID
Sbjct: 23 SSVIQCSSVTYDKKAIVINGHRRIL-LSGSIHYPRSTPE-MWEDLIKKAKDGGLDVID 78
>At3g26125.1 68416.m03258 cytochrome P450, putative
Length = 541
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 486 SDTMYRYIILNAHPNLCM-KTF 548
SD ++Y++ NA P LC+ KTF
Sbjct: 464 SDDQFKYVVFNAGPRLCLGKTF 485
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 458 LVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPHTKDLN 613
+V ARH G VS K P + LLE +F ++++ P TK +N
Sbjct: 272 MVRARHSTKDGSRVSATSDKSEPNAAAQKLLEN--KFAKHLMESTPKTKPIN 321
>At1g13150.1 68414.m01525 cytochrome P450, putative strong
similarity to gi|3313615 F21J9.9 from Arabidopsis
thaliana and is a member of the PF|00067 Cytochrome P450
family
Length = 529
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 486 SDTMYRYIILNAHPNLCM-KTF 548
SD ++Y++ NA P LC+ KTF
Sbjct: 449 SDDQFKYVVFNAGPRLCIGKTF 470
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 136 DRYFGSKCQFYLIKSYVRVTYVL 68
DRYFGS C+ LI ++ + Y+L
Sbjct: 92 DRYFGSVCELDLIFNFHKAYYIL 114
>At2g36360.1 68415.m04462 kelch repeat-containing protein low
similarity to rngB protein, Dictyostelium discoideum,
PIR:S68824; contains Pfam profile PF01344: Kelch motif
Length = 496
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Frame = +2
Query: 257 NTVTRYLNQSEAAALDQDLFTEYK---FSVDQLMELAGLSVASAIAKVFPPSTHSSALIV 427
++V + +N E +++L E FS+ L + G+SV+S + P + +
Sbjct: 333 SSVPQVVNPPEIKESERELDKERGQDGFSIVDLQQKMGISVSSGLRLQIPEESEDQEFVE 392
Query: 428 CGPXNNGGDGL-VAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKL 592
G GD + A +Q+ + H+ + TP+ L L +R ++ ++
Sbjct: 393 LGTRLIEGDVVDERASMIQMAAQALRQHWKQSTPRTLQLKELGSLLRDYQRLVTRI 448
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 136 DRYFGSKCQFYLIKSYVRVTYVL 68
DRYFGS C+ LI ++ + Y+L
Sbjct: 92 DRYFGSVCELDLIFNFHKAYYIL 114
>At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein
similar to beta-galactosidase BG1 GI:15081596 from
[Vitis vinifera]
Length = 848
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +2
Query: 449 GDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNII 583
G L+ + +L Y+ S+HYP+ TP+ ++ N++++ + +N I
Sbjct: 48 GTSLIINGNRELL-YSGSIHYPRSTPE-MWPNIIKRAKQGGLNTI 90
>At1g13140.1 68414.m01523 cytochrome P450 family protein similar to
Cytochrome P450 86A2 (SP:O23066) [Arabidopsis thaliana];
contains Pfam PF|00067 Cytochrome P450 family
Length = 519
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 486 SDTMYRYIILNAHPNLCM-KTF 548
+D ++Y++ NA P LC+ KTF
Sbjct: 441 NDDQFKYVVFNAGPRLCLGKTF 462
>At5g64810.1 68418.m08150 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 194
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 135 SNISKRIFYKCYCTGCS 185
+NI+KR +YKC GCS
Sbjct: 125 NNINKRNYYKCSSEGCS 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,976
Number of Sequences: 28952
Number of extensions: 277677
Number of successful extensions: 605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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