Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D07
(468 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 140 3e-34
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.025
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.2
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 2.2
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024863-1|AAF60877.1| 481|Caenorhabditis elegans Prion-like-(q... 29 2.2
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 2.2
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 2.2
Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical pr... 28 3.8
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 27 5.1
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 27 5.1
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 27 6.7
U29614-3|AAA68811.1| 91|Caenorhabditis elegans Hypothetical pr... 27 6.7
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 6.7
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 6.7
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 6.7
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 6.7
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 6.7
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 6.7
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 6.7
Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 8.9
U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical pr... 27 8.9
U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 8.9
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 8.9
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 140 bits (340), Expect = 3e-34
Identities = 70/135 (51%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Frame = +1
Query: 43 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 219
M+D +V P ++ MD AL+ VL+ A GL GLHE KALDKR+A CVL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 220 AXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 399
A NCDE Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120
Query: 400 DFGEETPALDVLKDY 444
++G E +L DY
Sbjct: 121 NWGNEEQGRAILTDY 135
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 35.1 bits (77), Expect = 0.025
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 154 LVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 271 NEHQIPLVKVDNNKKLGEWAGLCK 342
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 249 LVCSFITVXSQNT*YCLPLVKSFSGFVK 166
L+C+ I + Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 249 LVCSFITVXSQNT*YCLPLVKSFSGFVK 166
L+C+ I + Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC024863-1|AAF60877.1| 481|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform a protein.
Length = 481
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 161 CTRPPW-IKAVFSTSCNATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVL 18
C PW IK +T C S+L P + GLVG T+ +++ LT L
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILTFL 377
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 160 HGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 160 HGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical
protein W02B12.1 protein.
Length = 382
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 108 CSIARGAKDSFNPRWSC 158
CS+A G KD P WSC
Sbjct: 11 CSLAHGLKDLGAPNWSC 27
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 334 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 441
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 172 EAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 336
E KALD+ Q ++ VL CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLK-QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 76 PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 189
P+ +G + E+L+T +I +HG EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 103 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAY 246
V VAL + T LIH +H L++ K L V C+L + +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>U29614-3|AAA68811.1| 91|Caenorhabditis elegans Hypothetical
protein F18E9.6 protein.
Length = 91
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 227 TVMKLHTRNLFRLCATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAP 385
T M L T+ L + T +R LTT GL RLT + + S P
Sbjct: 14 TTMDLTTKGLSTMGLTTMRLTTMDLTTKGLSTMGLTRMRLTTIGLYNRTSGGP 66
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +2
Query: 269 ATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 433
+T+ RL G V+AR+T +A G A S ++ R W C
Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical
protein W02A11.8 protein.
Length = 266
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 331 GLCKIDKDGKARKIVGCSCVVIKDFGEET 417
G C I+ D K VG + ++DFGEET
Sbjct: 80 GKCTIEADITIIKEVGDARAKLRDFGEET 108
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 229 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 354
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical
protein C07G1.2 protein.
Length = 635
Score = 26.6 bits (56), Expect = 8.9
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = +2
Query: 89 VTTWT*M*HCKRC*RQL*STVVLCTVFTKPLK----LLTRGKQYYVFWLXTVMKLHTRNL 256
+ WT + H + C R+ ++++C F+ K LLT Q + + L+ R
Sbjct: 368 IEVWTFIPHVQGCARKCRESLLMCEAFSYEPKSQTCLLTDTSQTFSSLARKITSLYYRRR 427
Query: 257 FRLCATNIRFHLSRLTTTKSLENGLV 334
F + L TKS + G V
Sbjct: 428 FSTKDVEFQVENKVLYATKSAKKGHV 453
>U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical
protein F12D9.2 protein.
Length = 163
Score = 26.6 bits (56), Expect = 8.9
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 100 DVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQ 261
D+N ++ LKT + G L A +AL KR L +L D A KK+ Q
Sbjct: 54 DLNTSIINWLKTGIEEGDLEGAAQRAIEALRKRNEELKLL--EMDPNAMKKVEQ 105
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 229 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 354
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 229 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 354
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,060,126
Number of Sequences: 27780
Number of extensions: 226341
Number of successful extensions: 705
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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