Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D07
(468 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 153 4e-38
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 153 4e-38
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 153 4e-38
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 146 9e-36
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 146 9e-36
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.13
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 30 0.68
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 0.90
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.90
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.90
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 1.6
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 6.3
At1g51920.1 68414.m05853 expressed protein 27 6.3
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 27 8.4
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 8.4
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 27 8.4
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 153 bits (372), Expect = 4e-38
Identities = 68/118 (57%), Positives = 93/118 (78%)
Frame = +1
Query: 94 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCN 273
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLA +C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 274 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 447
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 153 bits (372), Expect = 4e-38
Identities = 68/118 (57%), Positives = 93/118 (78%)
Frame = +1
Query: 94 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCN 273
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLA +C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 274 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 447
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 153 bits (372), Expect = 4e-38
Identities = 68/118 (57%), Positives = 93/118 (78%)
Frame = +1
Query: 94 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCN 273
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLA +C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 274 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 447
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 146 bits (353), Expect = 9e-36
Identities = 69/135 (51%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Frame = +1
Query: 46 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 222
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 223 XNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 402
+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 403 FGEETPALDVLKDYL 447
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 146 bits (353), Expect = 9e-36
Identities = 69/135 (51%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Frame = +1
Query: 46 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 222
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 223 XNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 402
+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 403 FGEETPALDVLKDYL 447
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 154 LVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 333
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 334 LCK 342
K
Sbjct: 110 ATK 112
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 30.3 bits (65), Expect = 0.68
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 127 LKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDN 306
LKT ++HG + G + ++ R L L+ N + V L N H + + + +
Sbjct: 1008 LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHNLQGLDMSD 1063
Query: 307 NKKLGEWAGLCKI 345
NK G GLC++
Sbjct: 1064 NKFSGSNKGLCQL 1076
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 0.90
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 381
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 29.9 bits (64), Expect = 0.90
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 160 HGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 29.9 bits (64), Expect = 0.90
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 160 HGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +1
Query: 124 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVD 303
V+K G L +GL + K + + + L + ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 304 NNKKLGEWAGLCKIDKDGKARKIVG 378
NKK E KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 211 IVLLASCQEL*RLREDRAQDHRGLKLSLAP 122
+ LLASC + +LRE+RA G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -3
Query: 364 LPCHPCQSCRDQPILQAFCCCQP*QVESDVRCTEPEQVSCMQLHHSXQP 218
+P P S R PI A CC+P + S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 373 QFSLPCHPCQSCRDQPILQAFCCCQP*QVESDVRCTEPEQVSCMQLHHSXQPKHIV 206
Q S C+ C +P L + Q D RC+ E+ + +L H+ Q KHI+
Sbjct: 422 QSSFSCNMVGICDGEPKLMGLK--ELLQAFIDFRCSVVERRARFKLSHAQQRKHII 475
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 26.6 bits (56), Expect = 8.4
Identities = 19/72 (26%), Positives = 25/72 (34%)
Frame = -3
Query: 358 CHPCQSCRDQPILQAFCCCQP*QVESDVRCTEPEQVSCMQLHHSXQPKHIVLLASCQEL* 179
C C+ C+ QP C CQ E+ C V C + +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 178 RLREDRAQDHRG 143
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 307 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 414
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 187 LDKRQAVLCVLAXNCDEAAYKKLVQALCNE 276
L RQA++C L+ +C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,471,975
Number of Sequences: 28952
Number of extensions: 206580
Number of successful extensions: 613
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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