Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D05
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.7  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.9  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 179 LKSNKKLKWALDFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSD 316
           LK+ + +    D +  +      L S PG+ ++ N+  A S KD D
Sbjct: 40  LKTTQSVSVTKDQDVSSSVNRFRLRSRPGHRKTDNSLSATSKKDKD 85


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 278 SNANYAESSKDSDSNLLLIKKLWDVALGPLKQV 376
           ++ NYA    D D N+ ++ +  D+  G LK+V
Sbjct: 53  THINYAFVGLDKDCNIQVLDEENDINQGGLKRV 85


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = -1

Query: 439 HHYWKYRDRVTSHVHNKKIHGYLFQ 365
           H Y  +      H HN   H Y  Q
Sbjct: 279 HEYNSFNWTANGHGHNTSSHNYYAQ 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,574
Number of Sequences: 336
Number of extensions: 3394
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)