Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D05
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)                   30   1.9  
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                29   3.3  
SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)           29   4.4  

>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 251 PSPPGYSQSSNANYAESSKDSDSNLLLIKKLWDVALGPLKQV 376
           PSPP   Q S+   A S  D  ++L  +K  W + L P  +V
Sbjct: 550 PSPPRLGQVSDGPTANSDIDYQTSLDFVKATWTIFLEPHTRV 591


>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
          Length = 1699

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 251 PSPPGYSQSSNANYAESSKDSDSNLLLIKKLWDVALGPLKQV 376
           PSPP   Q S+   A S  D  ++L  +K  W + L P  +V
Sbjct: 496 PSPPRLGQVSDGPTANSDIDYQTSLDFVKATWTIFLEPHTRV 537


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 505 NHFESTLCSKQRLHRPHY*HANHHYWKYRDRV 410
           +H+   LC  +R H  H+ H +HH+  Y D V
Sbjct: 231 HHYHHHLCHDRR-HHYHHVHYDHHHHHYHDIV 261


>SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)
          Length = 674

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 185 SNKKLKWALDFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSDS 319
           SN+++  AL  N +   ++T    PPGY + S +  A+ +K+ ++
Sbjct: 54  SNREIMEALTGNLEKAYIATNCRCPPGYPKISTSKPAKCAKNIEN 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,796,425
Number of Sequences: 59808
Number of extensions: 382162
Number of successful extensions: 1061
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)