Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D05
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.84 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 620 HLSELVTIP-YSDTYRVLKECLLYFRYNKQFFV 525
           H+S L T+P YS    V  E L +F Y K  F+
Sbjct: 141 HVSFLRTVPPYSHQTDVWVELLKHFNYMKVIFI 173


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 260 PGYSQSSNANYAESSKDSDSNLLLI 334
           P ++Q   A YA++SKD   ++L+I
Sbjct: 300 PFHAQRLLAVYAQNSKDKPEDVLII 324


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 439 GWHVNSEAGEGAVCYTKYFQNG*RYTSY 522
           GW+     G    C T YF  G    SY
Sbjct: 189 GWNRYVPEGNMTACGTDYFNRGLLSASY 216


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 439 GWHVNSEAGEGAVCYTKYFQNG*RYTSY 522
           GW+     G    C T YF  G    SY
Sbjct: 65  GWNRYVPEGNMTACGTDYFNRGLLSASY 92


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 218 NQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSNLLLIKKLW 346
           N+ +          P  S SSN + AES   S  N L   K++
Sbjct: 259 NEDSSDSGAAASDRPPASASSNEHEAESEHTSTPNFLSEAKIF 301


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 252 GSSVESCLFF 223
           GSS+ SCLFF
Sbjct: 372 GSSIWSCLFF 381


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 252 GSSVESCLFF 223
           GSS+ SCLFF
Sbjct: 425 GSSIWSCLFF 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,212
Number of Sequences: 438
Number of extensions: 4264
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)