Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D05
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10780.1 68418.m01253 expressed protein HSPC184, Homo sapiens...    87   1e-17
At1g33055.1 68414.m04073 expressed protein                             30   1.5  
At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family prot...    29   3.6  
At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family pr...    28   6.2  
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain...    28   6.2  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   8.2  

>At5g10780.1 68418.m01253 expressed protein HSPC184, Homo sapiens,
           EMBL:AF151018
          Length = 180

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 47/154 (30%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
 Frame = +2

Query: 200 KWALDFN-QKNKQLSTELPSPPGYSQSSNA--NYAESSKDSDSNLLL-IKKLWDVALGPL 367
           +WA++F+ Q     S ++  PPG+S++S    + A S +  D+     ++K W+VA  P 
Sbjct: 13  RWAVEFSDQSTVPSSRDILDPPGFSRASQEQDDSANSRQKKDAEATWKLQKAWEVAQSPF 72

Query: 368 KQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVEG--TQAIGQKIVY 541
           K + M  F+M+MAGN++ +F I +    + +P+ AL +    F+  +    + +  K+V+
Sbjct: 73  KNLMMMGFMMWMAGNTVHLFSIGITFSALWQPISALQSVGKIFEPFKDNKVELLMPKLVF 132

Query: 542 CIGNIVNILLALYKCQSMGLLPTHSSDWLAFEEP 643
              N+  + L ++K  ++GLLPTH+SDW++   P
Sbjct: 133 LALNLGGLALGVWKLNTLGLLPTHASDWVSSLPP 166


>At1g33055.1 68414.m04073 expressed protein
          Length = 66

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 203 WALDFNQKNKQLSTELPSPPGYSQSS 280
           ++L F+  N  L   LPSPP YS+SS
Sbjct: 41  YSLPFHSSNTSLPLLLPSPPPYSRSS 66


>At2g04020.1 68415.m00369 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL6 (GI:15054390), EXL1
           (GI:15054382) [Arabidopsis thaliana]; contains Pfam
           profile PF00657: Lipase/Acylhydrolase with GDSL-like
           motif
          Length = 261

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 477 LLHKVLSKWLKVHKLSDKKLFI 542
           LLHK L K  K+HKL  +K FI
Sbjct: 204 LLHKFLKKIEKLHKLGARKFFI 225


>At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 466

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 212 DFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSNLL 328
           DFN+K+   +++   PP Y  SS+++ + ++    S+LL
Sbjct: 101 DFNRKSSPANSDYLRPPHYPSSSSSSLSPNNISEYSSLL 139


>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 411

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 361 PFETSTHESFYYVHGW*LYLYISNN 435
           P+E+S  E+ Y+ H W L LY++ N
Sbjct: 138 PYESSVFEA-YFEHKWRLILYVNGN 161


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 432  IGNIEIELPAMYIIKRFMGTCFKGPNAT 349
            +GN+ I+LP   +I  F GTC +   AT
Sbjct: 1290 LGNLSIQLPGKKLIFAFDGTCSEFMRAT 1317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,454
Number of Sequences: 28952
Number of extensions: 269976
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)