Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D04
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    75   4e-14
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 70   1e-12
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                38   0.009
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  36   0.022
SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)                    34   0.12 
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)                   33   0.15 
SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)                    30   1.4  
SB_34212| Best HMM Match : EGF (HMM E-Value=1.1e-05)                   30   1.4  
SB_45072| Best HMM Match : Kazal_2 (HMM E-Value=5.8e-06)               29   2.5  
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)                 29   2.5  
SB_2808| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   29   3.3  
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_8219| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               28   7.6  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
 Frame = +3

Query: 189 AISMAQFGLVFGITAILIPQLQSQ-KPVMLIDESTESWIAAIPGFALLFGNFTIPTIMGK 365
           A+    FG   G ++  +  L ++ K  + +  S  SW +++     + G       +  
Sbjct: 52  ALGPLSFGFCLGYSSSALEDLIAESKESVKLTVSQGSWFSSLVTLGAILGAPLGGWTLEY 111

Query: 366 YGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSLGPILIGEYTSPKY 545
           +GRK   +   +P  VGW+LI  A++ Y +   RF+ G+++GM +   P+ I E +SP  
Sbjct: 112 FGRKGTIMACAVPFEVGWMLIAYANSHYMLYIGRFITGLAVGMVSLTVPVYIAEISSPSL 171

Query: 546 RGAFLSSLCLVMAMATLTVHSVGSYVTWQWTA 641
           RG   S   L + M  L  +S+G  + W+W A
Sbjct: 172 RGMLGSVNQLAVTMGLLLAYSMGVVLKWRWLA 203


>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
 Frame = +3

Query: 189 AISMAQFGLVFGITAILIPQLQSQKPVMLIDESTE-SWIAAIPGFALLFGNFTIPTIMGK 365
           A+    FG   G ++    QL+++    L   + E +W  ++     + G      ++  
Sbjct: 48  ALGPLSFGYCMGYSSAATTQLENKNATDLYLNADEITWFGSLLNIGAMLGGPIQGFLIDL 107

Query: 366 YGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSLGPILIGEYTSPKY 545
            GRK A I++ +P   GWLLI    N   + A RF+ G+ +GM++   P+ I E  S   
Sbjct: 108 IGRKFALILTSVPFCSGWLLIGFGKNAAMLNAGRFMSGLGVGMASLNVPVYISETASFSN 167

Query: 546 RGAFLSSLCLVMAMATLTVHSVGSYVTWQWTA 641
           RGA  S   L +    L  +++G    W+W+A
Sbjct: 168 RGAMGSINQLGITAGILISYAIGYAFDWRWSA 199


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
 Frame = +3

Query: 270 MLIDESTESWIA-AIPGFALLFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNT 446
           ++ + S+ SW   +I     LFGN     +  KYGR+    IS    +V W+   S+   
Sbjct: 85  LVCEYSSLSWATNSIMFTGWLFGNIVFGILSDKYGRRKVLFIS--SCMVCWVAFASSFVP 142

Query: 447 YFILAA--RFLQGISMGMSTSLGPILIGEYTSPKYR 548
           Y+ L A  RF  G  +G S  +  I+  E+  P+ R
Sbjct: 143 YYWLYAVFRFFIGFGLGGSIVILFIMATEFVGPQKR 178


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 327 LFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITS---ASNTYFILAARFLQGISMGMS 497
           + G    P    ++GRK + + +    IVG LL+     A  +  +   RF+ GI+ GM+
Sbjct: 1   MIGALAGPLFANRFGRKRSLLANNGLAIVGALLMFLSYFAKTSPLLTVGRFVIGINCGMN 60

Query: 498 TSLGPILIGEYTSPKYRGA 554
           T++ PI + E      RG+
Sbjct: 61  TAIAPIYLSELAPIHLRGS 79


>SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)
          Length = 277

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 327 LFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSL 506
           LFG+F   T+   +GRK+   +SV      ++  +  ++   ++   F  G+S+  S + 
Sbjct: 157 LFGSFLSGTVSDAFGRKITLTVSVALQAAAFIGASFVTSHIALIILLFFAGLSLASSIAC 216

Query: 507 GPILIGEYTSPKYR 548
              LI E   P +R
Sbjct: 217 QYTLIIEMIGPDHR 230


>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
          Length = 363

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 327 LFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSL 506
           LFG+F   T+   +GRK+   +SV      ++  +  ++   ++   F  G+S+  S + 
Sbjct: 160 LFGSFLSGTVSDAFGRKITLTVSVALQAAAFIGASFVTSHIALIILIFFAGLSLASSIAC 219

Query: 507 GPILIGEYTSPKYR 548
              LI E   P +R
Sbjct: 220 QYTLIIEMIGPDHR 233


>SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)
          Length = 302

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +3

Query: 327 LFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSL 506
           LFG+    T+   +GRK++  +SV      ++  +  ++   ++   F  G+S+  S + 
Sbjct: 66  LFGSLLSGTLSDAFGRKISLTVSVALQAAAFIGASFVTSHTALIILIFFAGLSIASSIAC 125

Query: 507 GPILIGEYTSPKYR 548
              LI E   P +R
Sbjct: 126 QYTLIIEMIGPDHR 139


>SB_34212| Best HMM Match : EGF (HMM E-Value=1.1e-05)
          Length = 178

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 500 CAHSHRDPLEKSCSQDEVCVGGAC 429
           CA + RDPL+ +C +D+ C  G C
Sbjct: 88  CARASRDPLQSAC-EDKPCKNGTC 110


>SB_45072| Best HMM Match : Kazal_2 (HMM E-Value=5.8e-06)
          Length = 361

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 452 HLGCKISPRDLYGNEHIIGTDLD 520
           H GC+  P D  GNE +I  D+D
Sbjct: 158 HAGCRGIPEDTVGNEAVIDVDVD 180


>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
          Length = 1088

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
 Frame = +3

Query: 213 LVFGITAILI-PQLQSQKPVMLIDESTESWIAAIPGFALLFGNFTIPTIMGKYGRKVANI 389
           L FG+ A +I P L     V     ++  WI      + LFG+     +  +Y   +  +
Sbjct: 612 LTFGMAAAVIGPTLLELGCVTSRPVNSMGWIFFSQALSALFGSSISGIMADRYDCNIILV 671

Query: 390 ISVLPVIVGWLLITSASNTYFILAARFLQGISMG-MSTSLGPILI 521
           + V  V +   +I   S    +L+     G++MG + T    +LI
Sbjct: 672 VCVACVAISLTVIPLCSQFQLMLSVFAFLGVNMGIIDTVANSVLI 716


>SB_2808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 308 YTWFRAVIW*LHYTYHHGQIWTKSRQYHQCSAR-NRRLAVNHKRLQH 445
           + W+R V   L ++Y +G++W+  R+   C A     L + H R+ H
Sbjct: 9   HQWYRPVS--LKWSYANGKVWSSDRKKVACKANIYDALTLAHTRIAH 53


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 470 SPRDLYGNEHIIGTDLDWRIHQPKVPWSVFIESLLSYGD 586
           SP DL    H + T +DW    P  PW +        GD
Sbjct: 124 SPTDLQSEHHRLTTFVDWPESSPVRPWELSSAGFYYLGD 162


>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 327 LFGNFTIPTIMGKYGRKVANIISVL-PVIVGWLLITSASNTYFILAA-RFLQGISMGMST 500
           +FG      I  K+GRK+     V+   + G  L ++ +N Y++ A  R L G  +G  +
Sbjct: 265 IFGAMAGSIISDKFGRKIVVFPCVIFASLCG--LASAFANKYWVFALFRALLGAGIGGYS 322

Query: 501 SLGPILIGEYTSPKYR 548
             G +L+ EY   ++R
Sbjct: 323 ICGFVLVMEYIGIRHR 338


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 343 VKLPNNSAKPGIAAIQDSVDSSI 275
           +KLP    KPGI  IQD +D S+
Sbjct: 779 IKLPMARPKPGICPIQDYIDPSL 801


>SB_8219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 350 YHHGQIWTKSRQYHQCSARNRRLAVNHKRLQHILHLGCKISPRDLYGNE 496
           Y H +   K R Y   S R+  + +     Q    L C  S   LYGN+
Sbjct: 89  YVHDEARNKRRMYANKSRRHSAMTITSGGYQSSSSLSCSGSDYSLYGND 137


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 413 DDYGQNTDDIGDFSSIFAHDGRYSEV 336
           DD  ++TDDI DFS+      RYS +
Sbjct: 187 DDDDEDTDDIPDFSNFSTCSPRYSRI 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,177,231
Number of Sequences: 59808
Number of extensions: 454105
Number of successful extensions: 1381
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)