Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D03
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    35   0.004
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   1.3  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    24   5.2  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    24   5.2  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    24   5.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.8  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    23   9.0  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    23   9.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   9.0  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 34.7 bits (76), Expect = 0.004
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 99  AGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 218
           A +R++   +   +    YR DL K ++ RASAIL SQRP
Sbjct: 90  ASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 251 GCGCLSLFCFDGPLG 207
           GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 113 VTVQSEEVVKG*PLPHRPMQGYPSSCFSHPPLPEAHQS 226
           V +  +  VK  P P  P Q YP +  S  P  +  Q+
Sbjct: 194 VRLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQYQQT 231


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   RRTLHRKGFTVVYNESKGYQKA 66
           RR + R+G  VV+NE  G  KA
Sbjct: 199 RRHVQRRGPLVVFNEDTGIVKA 220


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   RRTLHRKGFTVVYNESKGYQKA 66
           RR + R+G  VV+NE  G  KA
Sbjct: 199 RRHVQRRGPLVVFNEDAGIVKA 220


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 90  PFKAGARRSLYKVKRLLKANHYRTDL 167
           P   GA   L  V  LLK  +Y TDL
Sbjct: 81  PIPKGAPNFLADVLNLLKKKYYATDL 106


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 148 LAFNNLFTLYSDLLAPAL 95
           +AFNN+F  +S  L P +
Sbjct: 92  IAFNNIFAFHSSQLRPTI 109


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 149 PLPHRPMQGYPSSCFSHPPLPEAHQSK 229
           P P+ P  GYP   + +P  P  + ++
Sbjct: 100 PQPYPPQGGYPQQPYYYPNQPNYYPAQ 126


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 290 FRNLLSAYKLFRLGCGCLSLFC 225
           F+N+ +A+ LF     C+ LFC
Sbjct: 152 FKNIANAFFLFVTLLQCIPLFC 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,111,249
Number of Sequences: 5004
Number of extensions: 18505
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)