Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_D03
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 29 1.2
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 3.6
05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072 27 4.7
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 27 4.7
04_04_1404 + 33302080-33303341,33303435-33305307 27 4.7
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 26 6.2
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 26 6.2
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 26 8.3
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818... 26 8.3
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 26 8.3
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 169 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 264
A PF + +S+PR P + RQP P R++
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 216 ASGSGGWLKHDEG*PCIGLCGSG*P 142
A GSGGW + +G CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072
Length = 258
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 279 IKRLQIIPTWLRLS*PFLL*WASGSGGWLKH 187
++R + P+W + L W +GSGG ++H
Sbjct: 7 LRRARSHPSWAAAARGLLATWGAGSGGRVRH 37
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 9 PAQEGIHSSVQRKQRLPESPLKT*SAAPFKAGARRSLYKVKRLLKANHYRTDL 167
P Q+ V + P+SP+ + P AGARR Y + +N Y DL
Sbjct: 524 PLQQSNSFGVPLRSAGPQSPINGSTKQPMSAGARRPSY-----VSSNKYFDDL 571
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 196 PSSAPRGPSKQKRLR---QPQPSRNNL 267
P+S P G K+KRLR + +P R NL
Sbjct: 381 PTSQPEGERKKKRLRKTGETEPCRGNL 407
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 196 PSSAPRGPSKQKRLRQ---PQPSRNNL 267
P+ P G K+KRLR+ +PSR NL
Sbjct: 299 PTPQPEGERKKKRLRKMGGTEPSRGNL 325
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 196 PSSAPRGPSKQKRLRQ---PQPSRNNL 267
P+S P G K+KRLR+ +P R NL
Sbjct: 352 PTSQPEGERKKKRLRKMGGTEPCRGNL 378
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 161 RPMQGYPSSCFSHPPLPEAHQSKKG*DSRNQVGII 265
RP+ P+ + PP A +++G RN+ GI+
Sbjct: 274 RPLLHLPAFVEAPPPATSAAATRRGEKKRNKTGIV 308
>03_02_0407 -
8187956-8188099,8188203-8188371,8188456-8188625,
8188737-8188915,8189014-8189079,8189171-8189344,
8189593-8189891,8190136-8190236,8190328-8190412,
8190527-8190680,8190781-8190986,8192403-8192647
Length = 663
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 33 SVQRKQRLPESPLKT*SAAPFKA 101
S+QRK+ P +P+K +++PF A
Sbjct: 44 SLQRKRSAPTTPIKDGASSPFAA 66
>02_05_0740 - 31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 25.8 bits (54), Expect = 8.3
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 19 KGFTVVYNESKGYQKAR*KLNPPLHSRL--VPGGHCTK*RGC*RLTTTAQTYARLPFVVL 192
K F V+Y + KGY+ L L SRL P + + +++AQ + V+
Sbjct: 776 KAFQVLYWKKKGYEDTLRSLRASLASRLKSQPASSSQQDKDSSTPSSSAQVNSNRKLVIR 835
Query: 193 QPSSAPRGPSKQKRLRQP 246
+ ++ P K R P
Sbjct: 836 RNNTLPTRNVKHLAFRDP 853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,932,982
Number of Sequences: 37544
Number of extensions: 155083
Number of successful extensions: 432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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