Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D03
         (330 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        43   5e-05
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    31   0.23 
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)               27   3.7  
SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                27   4.9  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         26   6.5  
SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)              26   6.5  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   26   6.5  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       26   8.5  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 24/70 (34%), Positives = 38/70 (54%)
 Frame = +3

Query: 9   PAQEGIHSSVQRKQRLPESPLKT*SAAPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 188
           P+ +G+  +  RK +    P K  +       +RR+L  ++ +   N+YR DL    +RR
Sbjct: 8   PSGKGVVITT-RKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRR 66

Query: 189 ASAILRSQRP 218
           A AILRSQ+P
Sbjct: 67  ACAILRSQKP 76


>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 219

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 278 LSAY-KLFRLGCGCLSLFCFDGPLG 207
           + AY +  R+GC CL L C+DGP G
Sbjct: 86  VEAYVRCLRMGCRCLELDCWDGPDG 110


>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
          Length = 505

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 148 TTTAQTYARLPFVVLQPSSAPRG-PSKQKRLRQPQPSRNN 264
           T T Q  AR+     + + +P G P++ +R   PQPS+N+
Sbjct: 254 TITNQQTARVATPTSEAAPSPPGTPTQPRRSNLPQPSKNH 293


>SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 137 VKG*PLPHR----PMQGYPSSCFSHPPLPEAHQSKKG 235
           V+G P P +    P QGYP+    +PP  + +Q+  G
Sbjct: 38  VQGYPPPQQGYPPPQQGYPAQQQGYPPAQQGYQTTGG 74


>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 1   RRTLHRKGFTVVYNESKGYQKA 66
           RRT+ RKG  ++YN  +G ++A
Sbjct: 196 RRTVMRKGPLIIYNNDQGLRQA 217


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 148  TTTAQTYARLPFVVLQPSSAP 210
            TTT  +Y+++P  V+ PS++P
Sbjct: 2413 TTTYSSYSKIPSTVILPSASP 2433


>SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)
          Length = 147

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 178 PFVVLQPSSAPRGPSKQKRLRQPQPSRNN 264
           P VV +P  +P+ P+K K     +PS ++
Sbjct: 56  PLVVDEPKPSPKSPTKSKSQTDSRPSSSS 84


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 148 TTTAQTYARLPFVVLQPSSAP 210
           TTT  +Y+++P  V+ PS++P
Sbjct: 404 TTTYSSYSKIPSTVILPSASP 424


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 158 HRPMQGYPSSCFSHPPLPEAH 220
           H P+ G P++  S PP+P  H
Sbjct: 242 HPPISGPPTTSMSGPPIPVHH 262


>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 159 CGSG*PLTTSSLCTVTSWH 103
           C S  P+ T S C+V +WH
Sbjct: 206 CCSAFPIRTPSTCSVCTWH 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,858,704
Number of Sequences: 59808
Number of extensions: 169309
Number of successful extensions: 372
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)