Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D03
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    29   0.79 
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    29   0.79 
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    29   1.0  
Z77663-5|CAB01215.1|  365|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 52  GYQKAR*KLNPPLHSRLVPGGHCTK*RGC*RLTTTAQTYARLPFVVLQPSSAPRGPS 222
           GY +A    NPP   R  P G  T  RG   +T  +  Y    F+V     AP+ P+
Sbjct: 102 GYLQAMIPSNPPADMRPPPDGIWTAVRGVNNVTRASWVYYPGSFLVTDTFWAPQEPN 158


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 52  GYQKAR*KLNPPLHSRLVPGGHCTK*RGC*RLTTTAQTYARLPFVVLQPSSAPRGPS 222
           GY +A    NPP   R  P G  T  RG   +T  +  Y    F+V     AP+ P+
Sbjct: 102 GYLQAMIPSNPPADMRPPPDGIWTAVRGVNNVTRASWVYYPGSFLVTDTFWAPQEPN 158


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 151 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 252
           +T  T  R P ++  PSS P GPSK    + P P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKPPTP 245


>Z77663-5|CAB01215.1|  365|Caenorhabditis elegans Hypothetical
           protein F53F4.6 protein.
          Length = 365

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 149 PLPHRPMQGYPSSCFSHPPLPEAHQSKKG*DSRN 250
           PL H P+  Y S+  SH P P  +QS++    RN
Sbjct: 110 PLHHFPVNQYSSASSSHHP-PTINQSQQQIYQRN 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,285,483
Number of Sequences: 27780
Number of extensions: 111395
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)